Detailed information on ENST00000544269

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00116668 desmoglein 3 novel protein coding ENST00000544269 522 183 UTR3 Trans

Sequence

>ENST00000544269 (430 nt)
AGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCTCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGG<br />TCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTCCTGGGATTACGGGCGTGAGCCACCGCGCCCGGCCTATACTGGTCTCTCTACT<br />CCTCTGCGTCCTGCAACACAGGAGCCCTCATAAGGAAATGAAGACCCAAAGAAGTAGTTGGTGTCAGTTACTTCTACACCGAATTGGACAAAGAATACCA<br />GAGCCTAAGCCTGGAGACCTGATTGAGATTTTTCGCCCTTTCTACAGACACTGGGCCATCTATGTTGGCGATGGATATGTGGTTCATCTGGCCCCTCCAA<br />GTGAGGTCGCAGGAGCTGGTGCAGCCAGTG

Expression



Full and truncated open reading frames discovered in ENST00000544269

In silico ORF/peptide predictions
>peptide 1 (64 aa)
MKTQRSSWCQLLLHRIGQRIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAAS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT021883 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q5R611|HRSL3_PONAB (Evalue: 4.0E-25)