Detailed information on ENST00000547852

lncRNA-RNA interactions

Number of interactions: 25

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000345714 serum/glucocorticoid regulated kinase family, member 3 protein coding ENST00000547852 629 278 UTR3 Trans
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding ENST00000547852 508 252 UTR3 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000547852 603 273 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000547852 611 270 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000547852 551 277 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding ENST00000547852 508 252 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000547852 628 267 UTR3 Trans
TCONS_00050192 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000547852 607 279 UTR5 Trans
TCONS_00050209 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000547852 607 279 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000547852 665 275 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding ENST00000547852 636 282 UTR3 Trans
TCONS_00075844 forkhead box N3 novel protein coding ENST00000547852 530 275 UTR3 Trans
TCONS_00075845 forkhead box N3 novel protein coding ENST00000547852 530 275 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000547852 635 278 UTR5 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000547852 631 279 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000547852 647 276 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000547852 629 277 UTR3 Trans
TCONS_00199319 sorting nexin 24 novel noncoding ENST00000547852 625 279 noncoding Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000547852 646 277 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000547852 646 277 UTR3 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000547852 543 233 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000547852 613 265 UTR5 Trans
TCONS_00240832 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 novel protein coding ENST00000547852 642 275 UTR3 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding ENST00000547852 533 277 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000547852 619 275 UTR5 Trans

Sequence

>TCONS_00252827 (580 nt)
AAGATGGCGACAGCAGCGCAGGGACCCCTAAGCTTGCTGTGGGGCTGGCTGTGGAGCGAGCGCTTCTGGCTACCCGAGAACGTGAGCTGGGCTGATCTGG
AGGGGCCGGCCGACGGCTACGGTTACCCCCGCGGCCGGCACATCCTCTCGGTGTTCCCGCTGGCGGCGGGCATCTTCTTCGTGAGGCTGCTCTTCGAGCG
AGTTTCGCTCTTGTTGCCCAGGCTGGCGTGCAATGGCACGATCTCGGCTTACCGCGACCTCCGCCTCCCCTGTTGAAGCGATTCTCCTGCCTCAGCCTCC
CGAGTAGCTGGAATTACAGGCACGCGCCACCACGCCCGGCTACTTTTTGTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGCTGGTCTGTAAC
TCCTGACCTCAAGTGATCCGCCCGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTTGAGCCAGCTTCTAAATGAGTTT
AGCAGAATTGCAGTATACTTTGTTCAACCACATGATTTCACCTTTAAGTGAATGGATCATATGTTTGTCCAAGATAAAGAT

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.