Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000345714 | serum/glucocorticoid regulated kinase family, member 3 | protein coding | ENST00000547852 | 629 | 278 | UTR3 | Trans | |
ENST00000367590 | xenotropic and polytropic retrovirus receptor 1 | protein coding | ENST00000547852 | 508 | 252 | UTR3 | Trans | |
ENST00000478730 | ORAI calcium release-activated calcium modulator 2 | protein coding | ENST00000547852 | 603 | 273 | UTR3 | Trans | |
ENST00000593250 | centrosomal protein 76kDa | nonsense mediated decay | ENST00000547852 | 611 | 270 | UTR3 | Trans | |
ENST00000620139 | melanoregulin | protein coding | ENST00000547852 | 551 | 277 | UTR3 | Trans | |
TCONS_00009095 | xenotropic and polytropic retrovirus receptor 1 | novel protein coding | ENST00000547852 | 508 | 252 | UTR3 | Trans | |
TCONS_00028040 | ankyrin repeat domain 16 | novel protein coding | ENST00000547852 | 628 | 267 | UTR3 | Trans | |
TCONS_00050192 | FYVE, RhoGEF and PH domain containing 4 | novel protein coding | ENST00000547852 | 607 | 279 | UTR5 | Trans | |
TCONS_00050209 | FYVE, RhoGEF and PH domain containing 4 | novel protein coding | ENST00000547852 | 607 | 279 | UTR5 | Trans | |
TCONS_00065859 | ubiquitin specific peptidase 12 | novel protein coding | ENST00000547852 | 665 | 275 | UTR3 | Trans | |
TCONS_00065864 | long intergenic non-protein coding RNA 412 | novel protein coding | ENST00000547852 | 636 | 282 | UTR3 | Trans | |
TCONS_00075844 | forkhead box N3 | novel protein coding | ENST00000547852 | 530 | 275 | UTR3 | Trans | |
TCONS_00075845 | forkhead box N3 | novel protein coding | ENST00000547852 | 530 | 275 | UTR3 | Trans | |
TCONS_00124891 | zinc finger protein 540 | novel protein coding | ENST00000547852 | 635 | 278 | UTR5 | Trans | |
TCONS_00148450 | coiled-coil domain containing 88A | novel protein coding | ENST00000547852 | 631 | 279 | UTR3 | Trans | |
TCONS_00148450 | coiled-coil domain containing 88A | novel protein coding | ENST00000547852 | 647 | 276 | UTR3 | Trans | |
TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000547852 | 629 | 277 | UTR3 | Trans | |
TCONS_00199319 | sorting nexin 24 | novel noncoding | ENST00000547852 | 625 | 279 | noncoding | Trans | |
TCONS_00204911 | erythrocyte membrane protein band 4.1 like 4A | novel noncoding | ENST00000547852 | 646 | 277 | noncoding | Trans | |
TCONS_00204916 | erythrocyte membrane protein band 4.1 like 4A | novel protein coding | ENST00000547852 | 646 | 277 | UTR3 | Trans | |
TCONS_00240685 | metastasis suppressor 1 | novel protein coding | ENST00000547852 | 543 | 233 | UTR3 | Trans | |
TCONS_00240688 | metastasis suppressor 1 | novel protein coding | ENST00000547852 | 613 | 265 | UTR5 | Trans | |
TCONS_00240832 | ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 | novel protein coding | ENST00000547852 | 642 | 275 | UTR3 | Trans | |
TCONS_00251977 | G protein-coupled receptor 82 | novel protein coding | ENST00000547852 | 533 | 277 | UTR3 | Trans | |
TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000547852 | 619 | 275 | UTR5 | Trans |
>TCONS_00252827 (580 nt)
AAGATGGCGACAGCAGCGCAGGGACCCCTAAGCTTGCTGTGGGGCTGGCTGTGGAGCGAGCGCTTCTGGCTACCCGAGAACGTGAGCTGGGCTGATCTGG
AGGGGCCGGCCGACGGCTACGGTTACCCCCGCGGCCGGCACATCCTCTCGGTGTTCCCGCTGGCGGCGGGCATCTTCTTCGTGAGGCTGCTCTTCGAGCG
AGTTTCGCTCTTGTTGCCCAGGCTGGCGTGCAATGGCACGATCTCGGCTTACCGCGACCTCCGCCTCCCCTGTTGAAGCGATTCTCCTGCCTCAGCCTCC
CGAGTAGCTGGAATTACAGGCACGCGCCACCACGCCCGGCTACTTTTTGTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGCTGGTCTGTAAC
TCCTGACCTCAAGTGATCCGCCCGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTTGAGCCAGCTTCTAAATGAGTTT
AGCAGAATTGCAGTATACTTTGTTCAACCACATGATTTCACCTTTAAGTGAATGGATCATATGTTTGTCCAAGATAAAGAT
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.