Detailed information on ENST00000548896

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000548896 516 268 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000548896 501 271 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000548896 516 268 UTR3 Trans

Sequence

>ENST00000548896 (543 nt)
AATTCACATTTATATTTAAGAATTCATTTAAAATCTCTCTGATTCCTGGCTGGGCATGGCGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGGC<br />AGGCGGATCACTTGAGGTGAGGAGTTTAAGACCAGCCTGGCCAACATGGTGAAACCCCACCTCCACTAAAAATACAAAAATTAGCTGGGCACAGTGGTGG<br />GTGCCTAGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCTCTTGAACCTGGGAGGCAGAGACTGCAGTGTGCCGAGATGACACCACTGCACTCCAGC<br />TTGGATGACACGGTGAATGAACTGGTGCAGGTAGAAACGTACCTCCGCAGTGAAGGTGTGCTGGTGCGATACTGGTATCCTATTGACATGTTGGAAAGGC<br />CCCCAGCAGGCTACCGAAGGACTGCCACCAATGGGCTGGTCACACTGGACAATACCAACCTTCAAATTCACAGGGAGCTGCTGCGCTGCGAGGCTGCGCT<br />GGCCAGGCTGTACTGCCGCATGGCCCTGCTCAATATCTTCGCC

Expression



Full and truncated open reading frames discovered in ENST00000548896

In silico ORF/peptide predictions
>peptide 1 (88 aa)
MTPLHSSLDDTVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT118885 (Evalue: 1.0E-63)

Best hit to Swiss-Prot:
sp|Q9Y4D8|HECD4_HUMAN (Evalue: 3.0E-30)