Detailed information on ENST00000548908

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000548908 521 294 CDS Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000548908 626 300 UTR5 Trans

Sequence

>TCONS_00119961 (3065 nt)
AGACGGATTCCATTTCTAGATATGAAACCAGTTCTACATCAGCTGGTGATCGATATGATTCCTTGCTGGGTCGCTCTGGATCATACAGTTACTTAGAAGA
AAGAAAACCTTACAGCAGCAGGCTAGAAAAGGATGACTCAACTGACTTTAAAAAGGTACTTGGGTTATTTAGTTATATTTAATAAAAAGTTATCTTTTAT
GTTGAGATACTCATTCAAATATTATTTTAAAAACTCATAATGAAATGAGTATTTTGAAATAACTTATTTTCAGTTTTCGGCAAGTGATGGTTAAGTAGAA
TGTAAATAGCTGTTTGTTTATTAAAGGGAAGAGAAAGTCATCCAAGATGATTTTACATTTAAGTATCTCAAGTCATTGCTATGATTGAGCTGGAAAGGAG
CGTTCAATAAATGGGTGCACACAAATGTATACACACTTTGTTTCTTGTTACTAGGAAGCAGCCAAACAGAGAAGATGGCTTTTCCTAAGATAATATATTG
GTAGTTTTTCATAGGTAACTGAAAAACTTGGGGCAGCTCAAGTGCTATTAAGGATTGAAGTAATTAATGAATAAATCGCAGAAACTATATCTTCTTATTT
TGTGCTTATAGTAAACATAAAGTCTGTTGGAGAAGGAGAAAGCTTATGGCATTTGTACATGTCCCCAGTTATCTGGCAGCTATTTGAATTACATACTTTT
TTAAAAGCCAAGTTAGGGGAACGGGTGAGGGAGAGAATCATTTTACATTATGAGTAAGATTCATCATTTATTCAATAAAGAACTGAACTATGCTAAGTAG
AGAGATTCTACTCATGGGTAAATGGAGATGAAGATACTATCTTGCTCTTGTGGGCATTTTCCATGTAGTGGAGAGAGACCTTATTACACAGTCATACTAA
TGACTGTATAATAAATAATGGAGACAGTTAACTTGAAGTAGAAAAGCAATTTTATAAAAGTATATAACAAAAGAAAGTAGATTGATTTCCTTGGCTGGGT
GCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGTGGCAGGCCATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGAAGAAACC
TCGTCTCTACCAAAAATACAAAATTACCCCAGGTGTGGTGGCGCATGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACATGAACCCAG
GAGGCAGAGGTTGCAGTGAGCTGAGAACACGCCATTGCACTCCAGCCTGGGCAACAAGAGGAAAACTGTTATCTCAAAAAAAAAGAAAGTGGATTGATTT
CCAAAGGAAGTGTGGTTTCAGCCAAAAACGGAAGGATTACTAATAGTTAACGGGCAAAAATGGGTGAGAAAATTATTCCAAATAGAGTGGAATTACAAGC
ACATAGACCTGGTGGGGGGAGAATACATGATGCATTGGAATAAATAAATTTTAATTATAGCTAGTAGAGTGGAAGAAATATTCATTTGAGGCAGCAGTTG
TATAGGCTGAGACCAGATCATGCAGTGCCTTATAGGCCATTGTAAGATTTTTCGTATGCTAAGAACACTGGGAAGCCATTCAAGAGTTTTTAATTTGTGG
GTGGAAATGGAATGGTTGGCCTATGAAAATTATGAGATTTTCATTTTGAAAAGTTAATTTTAGCTCCTATATATAAAACAGATTAGAGGGTGATCAGGGA
ATTAGAATAGTTTAGATAAGAGATGATCATAGCCAGAATTATGGTGGAAGTAGTAAAGCAGGGATAAGGAAGAAGGAGTGTTAAGAAAGACGAAAAGCAT
TAGAAAAGGGGAAGGTCTTGGATTTTATCCTGGATTTGAAATATTTCAGGAAATACGTCATTTGCCTTTTAACTTTACTATAAGCAATGTAGAAGTATAA
TGATAAATACAGCTGGTACTCCGTCTCATTTTTGGGAATGCAAGAGAGAGTGATGGGCAGAAAATCTCACGGACTCCAAATAAAGATCACAGTGACTCCT
TAGCCCTAGCTGCAGTTGCTGTGCAGCTTTATGAACAAATTCTAGCTGAAAATGAAAAGCTGAAGGCACAGCTACATGATACAAATATGGAACTAACAGA
TCTTAAATTACAGTTGGAAAAGGCCACCCAGAGACAAGAAAGATTTGCTGATAGATCACTGTTGGAAATGGAAAAAAGGGTGACCGGCAAGAGTCAGTAT
CTTCTGGGCGGTATGACCTAACCAGTTTTACAGCTCATCAATTACTGCTGCTTGCTTTTTGCATAACACCCCAGAATGCTTATCATTTAAGGGAGAATAA
AACAGTACACTGCAATAATGTGTTGTGTGTTGGCTTTGCCTGTCACTCTTTGAAACAAGTTTAAAATAAACGCTGCAGTTGCTTTTCTATTACATTCACT
GCATTAATGCTACACATAATGTCAACCTAAATACAAAGCTATAAAGTCAGTTGGATAAATAATGGCTAGTACACATTGTGAGTGGAGGAAATGAGCTTCT
CTTACATTCCTCTGAAATTGCAAAGTACACATATTTTAGGCATGTTTGCTTCTTGCTTTTCTGCTTCTGTCACTGTAATATGATTGCATCTTTGTGTGAG
TTTTGTTTTTCTTCTCTGTACAGTCTTCAGTCTTGAGTATTGATTCACTCTAAGTTTTACATGAACTCAAAAAGTAGTTTGAATATGTTATGTAGCATCT
TCCCAGAAAGTCAAAGCTTTAAATTAAGAGCTTGTACTCTAAGGATAAAGATCTTCATATTTATTTTTGTCAAATTTTGGAAAGCTCTTTACATATCACT
GGCATCACATCTTTTCTACACTGCTCCTGATTGGACCTTTAATTCTGAAGTATCACTATTTCACAGTATAGAAGAAGACTTAAGAATATAATAATTATAT
AACTAACATTGGTACCTTAAATCGATCTAGGAACGAAGAGCTCTAGAAAGAAGAATATCTGAAATGGAAGAAGAGCTCAAAATGTTACCAGACCTAAAAG
CAGACAACCAGAGGCTAAAGGATGAAAATGGGGCCTTGATCAGAGTTATAAGCAAACTTTCCAAAT

Expression



Full and truncated open reading frames discovered in TCONS_00119961

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.