Detailed information on ENST00000548958

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00116334 low density lipoprotein receptor class A... novel protein coding ENST00000548958 575 429 UTR3 Trans

Sequence

>ENST00000548958 (1209 nt)
GGGAAAGCTAGACCTGCAGAGTGAAGAAAGCTGGTAATAGATGTCTGACAAACTAAAGAAAGACTTGTGTTACTGTCTGCACACTGGAAATTCTTCCTGG<br />TTGTGAGACAAGACCTCAGACTTATCTGAGCTAAGGGGAAGAAAGACTGCAACAGTGTTGGGCCTGTGGGTACACAGAAGTCAAGAATTGAAGATTGGAA<br />ACCTCCACCTAGATTTCAGAGGACATATGGAAATGCCTGGATATCTAGGCAGAAGTCTGCTACAGGGGCAGAGCCCTCATGGAGAACCTCTACTAGGGCA<br />GTGTGGAAAGAAAAGGTGGGGTTGGAGACTCCACACAGAGTCCCCACTGGCACACTGCCTAGTGGAGCTGTGAGAACAGGGCCACCATTCTCCAGACCTC<br />AGAATGGTAGATCAAATGACAACTTGCACCATGCACCAGGAAAAGCCACAAGCTCTCAATATCAGCCTGTGAAGGAGCTGCCTAAGGCCATGGGAACCCA<br />CCTCTCCCATCAGCATGCCCCCGATATGAGACATGGCGCCAAAGGAGATTATTTCAGAGATTTAAGATTTAATGACTGCCCCACTGGATTTTGGACTTGT<br />GCAGGGCCTATAGCCCCTTTGTTTTGGCCAATTTCTCTCATTTGGAATGGGAGCATTTACCCAATGCCTGTATCCCCATTGTATCTAGGAAGGAACTAAC<br />TTGTTTTTGATTTTACAGGCTTATAGGCAGAAGGGACTTGCCTTTTCTCAGATGAGACTTTGGATTATGGACTTTGAGTTAATGCTGAAATCATTTAAAA<br />TTTTGGGGGACTGTTGCGTAGGCATGATTGGTTGGGAAATGTAAAAAGACAAGAGATTTGGATGGGCTGGGGCAGAATGATAGGGTTTGGCTCTGTGTCC<br />CCACCCAAACCTTATCTCGAATTGTAATTCTTATGTGTTGAGGGAGGGAACTATAATCTCCACATGTTGAGAGAGGGAGGTGATTGGATCATGGGGGCAG<br />TTTCCCCCATGCTGTTCTCATGATAGTGAGTGAGTTCTCATGAGATCTGATGGTTTTAAAGATGTTTTGAAGTTCCTCCTTTTCTTTCTCTTGCTGCACT<br />GTGAAGAAGGTGCTTGTTTCCCCTTTGCCTTATGCCATCATTGTAAGTTTCTGAGGCCTCCCTAGCTATGTGGAACTGTAGTCAATTAAACCTATTTCCT<br />TTATAAATG

Expression



Full and truncated open reading frames discovered in ENST00000548958

In silico ORF/peptide predictions
>peptide 1 (69 aa)
MGTHLSHQHAPDMRHGAKGDYFRDLRFNDCPTGFWTCAGPIAPLFWPISLIWNGSIYPMPVSPLYLGRN


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT029531 (Evalue: 0)