Detailed information on ENST00000549303

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding ENST00000549303 592 378 UTR3 Trans

Sequence

>ENST00000549303 (776 nt)
AGTGAAAAGTGAGTTTGTGTTCGTGAATGCCCTGGTGACAAGAGTCTCTTTTTCCCCGAAGAAAGAGATTCACGTATGGCTGAAATTTCCCGGAGAACAC<br />AGGAGGGGGGGGAATATTGCAATAAATCAAATGTCTTTTGGAAATGAAGGTGGCTCTGAAGGAAGATCAAAACAAAAGCCACTAGAGGCCTCCTGCATGC<br />CTTGGCTCGTGGCCCCTTCTTCCATCTTCAAAGCCAGCATTGCCTGCTGCAAGTCCAGCTTAAAGGAAGGAAAGTTCTAATAAATTGAAAATGTTAACTC<br />TGTGGACTAGACATCTTCACGTGCTTCGTGTTCAACATGTTATAACTTCACCATAATACAAATTACCATCATGAGTTTATTTTTGTATATGGTGTAAGGA<br />AGAGGTCCAGTTACAGTCTTCTGCATATGGCTAGTCAGTTATCCCAGTACCATTTATTGAATAGGGAATCCTTTCCCCATTGCTTATTTTTGTCAACTTT<br />GTCGAAGATCAGATGGTTATTGGTGTGTGGCATTATTTCTGGGCCCTCTGTTCTGTTCCATTGGTCTTTGTGTCTGTTTTTGTATCAGTAGTGCCATGCT<br />GTTTTGGTTACTGTAGCCTTGTAGTATAGTTTGAAGTTGGGTAACTTGATGGTTAGAATGTTCTATTTGCTTAGGATTGCCTTGACTATTCAGGCTCTTT<br />TTTGGTTCTATATGAATTTAAAAATAGTGTTTTTTAATTCCTATGGTGGGAAGAAAGTGTGGATAAAAAACTGCCT

Expression



Full and truncated open reading frames discovered in ENST00000549303

In silico ORF/peptide predictions
>peptide 1 (92 aa)
VKSEFVFVNALVTRVSFSPKKEIHVWLKFPGEHRRGGNIAINQMSFGNEGGSEGRSKQKPLEASCMPWLVAPSSIFKASIACCKSSLKEGKF

>peptide 2 (54 aa)
MASQLSQYHLLNRESFPHCLFLSTLSKIRWLLVCGIISGPSVLFHWSLCLFLYQ


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT140356 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 2.0E-47)