Detailed information on ENST00000550103

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000620139 melanoregulin protein coding ENST00000550103 569 274 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000550103 523 255 UTR3 Trans

Sequence

>TCONS_00195633 (646 nt)
GGAAAAAGAAGGAAGCTCAACGATATCGGAACGAAGTAAGACACATCTTCACAGCCTTTGACACCTACTATCGTGGATTTTTAACTTTGGAAGATTTCAA
AAAAGCATTTAGGCAGGTGGCTCCCAAATTACCGGAAAGGACTGTTCTTGAGGTATTCAGAGTCTCGCTGTGTCACCCAGGCTGGAGTGCAATGGTGCCA
TCTCGACTCATAGCAACCCCCACCTTCCGCGTTCAAGTGATCCTCCTGCATCAGCCTCCTGAGTAGTTAGGACTACAGGTGCTTGCCACCACGCCTGGAT
AATTTTTGTAATTTTAGTAGAAACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGT
GCTGGGATTACAGGCATGAGCCACTGTGCCCGGACTCAACCAGATTGTTTTAACACAGTGTTGCTTTCACCAACTTGATTCGGACTAAGTTGGTTTTGGC
AAATGGCTTTCAACCAAATGATCTATACCCAAATTAAGAGGATTTGGGGGCTTACTGGATCCAGTGCCGTGCTGGAGCTGACTTATGCAGGCTCTCAAGA
CATTTCTGCCCATCTTTTCAGTAATGTCACCTTCATAGCTTGAAATC

Expression



Full and truncated open reading frames discovered in TCONS_00195633

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.