Detailed information on ENST00000550103

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000620139 melanoregulin protein coding ENST00000550103 569 274 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000550103 523 255 UTR3 Trans

Sequence

>ENST00000550103 (647 nt)
GGAAAAAGAAGGAAGCTCAACGATATCGGAACGAAGTAAGACACATCTTCACAGCCTTTGACACCTACTATCGTGGATTTTTAACTTTGGAAGATTTCAA<br />AAAAGCATTTAGGCAGGTGGCTCCCAAATTACCGGAAAGGACTGTTCTTGAGGTATTCAGAGTCTCGCTGTGTCACCCAGGCTGGAGTGCAATGGTGCCA<br />TCTCGACTCATAGCAACCCCCACCTTCCGCGTTCAAGTGATCCTCCTGCATCAGCCTCCTGAGTAGTTAGGACTACAGGTGCTTGCCACCACGCCTGGAT<br />AATTTTTGTAATTTTAGTAGAAACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGT<br />GCTGGGATTACAGGCATGAGCCACTGTGCCCGGACTCAACCAGATTGTTTTAACACAGTGTTGCTTTCACCAACTTGATTCGGACTAAGTTGGTTTTGGC<br />AAATGGCTTTCAACCAAATGATCTATACCCAAATTAAGAGGATTTGGGGGCTTACTGGATCCAGTGCCGTGCTGGAGCTGACTTATGCAGGCTCTCAAGA<br />CATTTCTGCCCATCTTTTCAGTAATGTCACCTTCATAGCTTGAAATC

Expression



Full and truncated open reading frames discovered in ENST00000550103

In silico ORF/peptide predictions
>peptide 1 (87 aa)
KKKEAQRYRNEVRHIFTAFDTYYRGFLTLEDFKKAFRQVAPKLPERTVLEVFRVSLCHPGWSAMVPSRLIATPTFRVQVILLHQPPE


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT039200 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 9.0E-29)