Detailed information on ENST00000550268

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000441159 family with sequence similarity 115, member C protein coding ENST00000550268 1280 802 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000550268 674 731 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000550268 674 731 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000550268 1120 734 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000550268 1120 734 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000550268 1120 734 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000550268 1120 734 UTR3 Trans
TCONS_00053513 anoctamin 4 novel protein coding ENST00000550268 2012 1033 UTR5 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000550268 809 393 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000550268 809 393 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000550268 809 393 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding ENST00000550268 1449 948 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding ENST00000550268 1449 948 UTR3 Trans

Sequence

>TCONS_00225248 (1819 nt)
TGGAGACATAGCAGCTTGGCAATGAAGTCAATACTAAGGATAGCAGAGTTTATGGGGAAGGAGAATGAGAGAGAAAATGATGACACTGTGGCTTTTGATC
CAGCTGTTCTTAAAAGTAATCATCCGCGTTGAACTTCCTGGTTTAGAAGGCAGAAGAAATCAGAGAGAAGGATGGAGTGGGGAAAAGAAGAGGGAGGCTG
ACAGAGAAGCTTAAAGAAATGCTTTCAGATGGCAACAAAAGCCAAAATAGACAAATGGGATTTAATTAAACGAAAGAGTTTCTGCACAGCAAAATAAACT
ATCATCAGCGTGAACAGGCAACCTACCGAATGGGAGAAAATTCTCACAATCTACCCATTTGACAAAAGGCTAATATCCAGAATCTACAAAGAACTTAAAC
AAATTTGAAAGAAAAAAAACAATCCCATCAAAAAGTGGGCAAAGGATATGAACAGACGCTTCTCAAAATAAGACATTTATGCAGCCAACAGACATATGAA
AAAATGCTCATCATCACTGGTCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACGCCAGTTAGAATGGCAATCATTAAGAAGTCAGGA
AACAACAGATGCTGGAGAGGATGTGAAGAAATAGGAACGCTTTTACACTGTTGGTGGGAGTGTGAATTAGTACAACCATTGTGGAAGACAGTGTGGTGAT
TCCTCAAGGATCTAGAACTAGAAATACCATTTGACCCAGCAATCCCATTACTGGGTATATACCCAAAGGATTATAAGTCACACTACTACAAAGACACATG
CACACGTATGTTTATTTTGGCACTATTCACCATAGCAAAGACTTGGAGCCAACCCAAACGTCCATCAATAATAGACTGGATAAAGAAAATGTGGCACATA
TACACCATGGAATACTATGCAGCCACAAAAAAGGATGAGTTCATGTCCTTTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAAATACCAC
GAGGACAGAAAACCAAACACTGCATGTTCTCACTTATAAGTGGAAATTGAACAATGAGAACACATGGACACAGACAGGGGAACATCACATGTGGGGGCCT
GCTCGGGGGTGGGGGGCTTGGGGAGGGATAGCGTTAGGAGAAATACCTAATGTAAATGAGGAGTTGATGGGTGCAGCAAACCAACATGGCACATGTATAC
CTATGTAACAAAACTGCACGTTGTGCACATGTAACCTAGAACTTAAAGTATAACTAAAAAAAAAAAAAAAAAAGAAAGAAAAATAAAGAGTTGTGCTTCA
GAAAAAAAAAAATGCTTTCAGGATTGCCTCTTCAGACATGGTTACAATACATATACTCAGTTTTCTTTATTAACTGGACCAGATTAATCTTCATTAAACT
GACTGAACTAGTAATCTTTTAATTTTATGTCATCAGACATAAACATTTGTCTTTTTTTTCGTTTTGCATTAGCTTAAATTGGTTTACCTCTCCTGATAGT
CTCCCTATACCCTTTTTCTTTGTCCTTTATACTCCAAGTAAATCATATACCATATGTGGGATCAAATGGGGAGTAAAGTATCCTCCATCCTCCTGTCCTC
ATTTGCTGTAAACCGGTGTAAATTCTTACTTGTGCATCTACAATCTGTATTATTGGGTATGTTCTTAATGTAATCTTTGTTCAGCTGATAGTTTATTTCA
AATTATGAAATCTGTTTATATCATTACTTGTTTTTCCTATGACATGTAGTTTTTCACAATAGCAAAGAGTTGATGTGATTTTTGTAGATATGCTAGAAAA
TAAAAACTTTTTAAATAACA

Expression



Full and truncated open reading frames discovered in TCONS_00225248

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.