| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000324537 | SH3-domain GRB2-like 3 | protein coding | ENST00000551328 | 532 | 283 | UTR5 | Trans | |
| ENST00000338758 | parvin, beta | protein coding | ENST00000551328 | 645 | 288 | UTR3 | Trans | |
| ENST00000427746 | holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) | protein coding | ENST00000551328 | 502 | 280 | UTR5 | Trans | |
| ENST00000448612 | WD repeat domain 27 | protein coding | ENST00000551328 | 552 | 287 | CDS | Trans | |
| ENST00000511184 | E74-like factor 2 (ets domain transcription factor) | nonsense mediated decay | ENST00000551328 | 600 | 286 | CDS_UTR | Trans | |
| ENST00000588483 | tropomyosin 4 | protein coding | ENST00000551328 | 572 | 280 | UTR5 | Trans | |
| TCONS_00050195 | FYVE, RhoGEF and PH domain containing 4 | novel protein coding | ENST00000551328 | 662 | 280 | UTR5 | Trans | |
| TCONS_00075813 | forkhead box N3 | novel protein coding | ENST00000551328 | 640 | 282 | UTR5 | Trans | |
| TCONS_00075827 | forkhead box N3 | novel protein coding | ENST00000551328 | 640 | 282 | UTR3 | Trans | |
| TCONS_00119512 | zinc finger and BTB domain containing 7C | novel protein coding | ENST00000551328 | 581 | 280 | UTR3 | Trans | |
| TCONS_00147100 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000551328 | 609 | 251 | UTR3 | Trans | |
| TCONS_00147113 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000551328 | 609 | 251 | UTR3 | Trans | |
| TCONS_00147115 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000551328 | 609 | 251 | UTR3 | Trans | |
| TCONS_00173724 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | ENST00000551328 | 611 | 281 | UTR5 | Trans | |
| TCONS_00173729 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | ENST00000551328 | 611 | 281 | UTR5 | Trans | |
| TCONS_00194682 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000551328 | 600 | 286 | UTR3 | Trans | |
| TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000551328 | 600 | 286 | UTR3 | Trans | |
| TCONS_00202828 | myotubularin related protein 12 | novel protein coding | ENST00000551328 | 611 | 282 | UTR3 | Trans |
>TCONS_00202828 (649 nt)
GGCCGGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCAAGGTGGGCAGATCACCAGGTCAGGAGATCGAGACCATCTGGCCAACATGGT
GAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGATGTGGTGGCACATGCCTGTAATCCCAGCTACTGAGGAGGCTGAGGCACGAGAATCGCTTGA
ACCCAGGAGACGTAGGTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCCGTCTCAATAAATAACCTTTCACTTTAA
CAAAATGAGAAATGTTACACCAAAATCAAGTCTAACTTTGTCAGCATAATTCTTGCTCTTTAATTTTCATCTTAATGTTTTAAGCCACAGACTGTTATGT
TCTGTTTTCTTAAATGATGGTTGTAGAGGAAAAGAGTAATGCATATAAATTTCCAAATCTACTATCTTAGGTGGTCGTCGGTTTTCTGAGGGTACTTCAG
CTGACAGAGAGATTCAGAGAACGTTAATGGAGTTACTGAATCAAATGGATGGATTTGATACTCTGCATAGAGTTAAAATGATCATGGCTACAAACAGACC
AGATACACTGGATCCTGCTTTGCTGCGTCCAGGAAGATTAGATAGAAAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.