Detailed information on ENST00000551721

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000264914 arylsulfatase B protein coding ENST00000551721 501 306 UTR3 Trans
TCONS_00159938 zinc fingers and homeoboxes 3 novel protein coding ENST00000551721 567 319 UTR3 Trans

Sequence

>TCONS_00159938 (2361 nt)
CCAGTGTGCTAAGCTTCCAGTCTTTTACTTGATCCTTTATAACACAGTGATGTTTGAGCTGTAGTCAGATTCCAAATCAAGTATCAAGAATTACAGAATG
TACTCTTCTGTTTTTTAATACTCTTAGTTATTTCTTGAACTTAAAAGCAAATATATACATAGATATGTGATTAAACAAGTATAGTAAAAAGTTAATTGTA
AGGTTTGGGTAGTAGACATCTAAGTGCTCACTCTAGGCCAGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGAGGGTCCAAGGCGGGTGGGTTACT
TGAGGCCAGAAGTTCGAGATCAGCCTGGCCAGCATGCTGAAACCCTGTCTCTACTAAAAATACAAAAAAAAAAATTGGCTGGGCATGGTGGCAGGCACCT
GTAATCCCGCTACCCGGGAGGCTGAGGCAGGAGAATCACTTAAACCTGGGAGGCAGAGGTTGCTGTGAGCCGAGACCATGCCACTGCACTCCAATCTGGG
TAACAGGGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAGTGCTCACTGTAAAATTATTTAAATTTTTCTTTATTAATAAAGTCCTTGAAAAATAAA
TCTATAGGTTAGTCTTGAATATCATTTAAATGGCCAAAGATCAGTCATCTTTCCTTCTTTTTCCAAAGTACTTTTATTAACTGTGAAGCACAATACTCTG
TTCCACAGAGGATAAAATGGGTGAATAACAAAACTCTGCCTTCCCAGAATTTACTCTCTTGGAAAAGATGATTCATAAATGCCTGAAAGAGTTCAAGGAG
GCAAGACCATATGGGATTCATTGCCAAAATAGATAATTGGTCTTAAAAAGCATATATAGGGTTTCTTCATTGTGGTCCAAATCATTTAAGAAATTTCTTC
AGCTGGTCTTGAAGAATGGGTTGGATTTGAATGTGTGAAGGGAGAGCTGAAGCATTCCAGGTAAGAGGAAAGGCAGGAGTCAAGATCAGGAGGCAGGGAG
GGACAAAGTGTGTTCAGCACAGCAGGAGACCTGACTGGAAAGAACAGAGTGGGTCTGGGAATAACAGCAGGAGTACAGTATTGCATGGTGCTTCATTATT
TCACAGAGCACTAAAAAAGAAAAGAGTTCAGCCAATTAAATTATGGTGTATCATCAATTGTAGGACATTTCCTGATTTCACAGATACTAAAAAATGAAAA
TAAGATGTGCCTCTCACAAATCAAAGCTGTGTGGTAGGTTGAAGGGTGTTGTGAGTGCCTTGAATGGTGGGGAGAGAAGCTGGCTGAAACTATCAGGTTG
GTGCAAAAGTAATTGCAGTTTTTGCCATTACTTTTAAGGACAAAAACCACAAAATATACTTGATCTTGGACGAGAGCCCTGGGTAAATGATACTTATTAT
CACTTACCTTGGAATTTTCGCACTTGTACCTTGCATATAATAATCTCAATATAATTTGTATCCTTGTTGCTGAAAGGATTCTAAGCAGCCTAAGTATTTA
TTTCATGGATGTTGAAAGGTAAACTTAATATTTTCTGTTGTGCAAATTGAAGATAAGGAGGCAGAAGTAGCTGCAGGCGTGAGCTGTGCGTTAGGTTGGC
GTGTCTCTCACTGATTTGAAGCCTTTGAAGTGGTTACTAGACTCTTATCCAGAGTCAGACTGGCTGCATCAGCATCACCTAGGGGAAGGACCTTCTTCAA
CATATTGGCCCCTGGCCCCATCCTGTCCCCATTGATTCAGAATTTCCAAGGGTGGGGCCTGCACATGGTATATTTCTAGAAATGCGCTAGTTAATTTTTG
AGAACTTCTACCGTAAACCATTGATTAATTTCATTTTTTTACCTCATTAAATTAAGTCATTCTGTATCCTTCCCTCTCATAAGTCTTTGAATTTCTTATT
AAATATTCTATTTTGGCCTTAATAAAGGAAAGGCGATAGTTCAGATGGTGAAAACAGTTTATAAAAGTGGGATGCAAAGTAGACTTCAGAAATCTACCTA
CCACAAGAAGGTTGATGATTCTCAAAAGTCTTGTGTGATAAACTGCTCAGGTGTCTCAGGAGACGTCTTTGTACTCCATTTTAAAGTCAGTGAATAGTGA
GCAATATAAATGGTACTTTGTTTTCTCTTGGTAGGCAAGGAGGGCACCATGAGCTGGCAGAGCGCCTCGTGGAAATACAGTATGAGCTAACGGACAGACT
AGCCTTCTATCTCTGTGGCAGGAAACCAGATCACAAAAATGGACAGCACTTTATAATACCTCAAATGGCAGACAGCAGCCTGGATTTGTCTGAATTGGCA
AAAGCTGCTAAGAAGAAACTTCAATCTCTAAGTAATCATTTGTTTGAAGAACTTGCCATGGA

Expression



Full and truncated open reading frames discovered in TCONS_00159938

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.