Detailed information on ENST00000552341

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000552341 531 277 UTR3 Trans
ENST00000450928 antisense antisense ENST00000552341 506 296 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000552341 533 300 CDS Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000552341 594 304 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000552341 561 295 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000552341 656 295 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000552341 502 286 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000552341 519 288 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000552341 534 274 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000552341 534 274 UTR3 Trans

Sequence

>TCONS_00168220 (1979 nt)
CTCTTCGTTAAGTCGGCCTTCCCAACATGGCGCAGTCTATTAACATCACGGAGCTGAATCTGCCGCAGCTAGAAATGCTCAAGAACCAGCTGGACCAGGA
AGTGGAGTTCTTGTCCACGTCCATTGCTCAGCTCAAAGTGGTACAGACCAAGTATGTGGAAGCCAAGGACTGTCTGAACGTGCTGAACAAGAGCAACGAG
GACGGAATTTCGCTCTGTCGCCCAGGCTGGAGCGCAATGGTGAGATCTTGGCTTACTGCAACCTCCGCCTCCCGAGTTCAAGAGATTCTTCTGCCTCAGT
CTCCCGAGTAGCTGGGACTTTAGGTACGCGCCACCACGACCGGCTAATTTTTGTATTAATAGTAGAGTTGGGGGTTTCACCATATTGGCCAGGCTAGTCT
CGAACTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTAGGATTACATTACAGGCGTGAGCCACTGCCCCCGGCCAAGAATACTCTTATTA
CACACTTTGTAGCTCTTTTATCTGACTTCACACCAACATCCAGCTAATGTCTTGTGAACACCAAGGAGTATGTATAGTTGAGATGTAATATTTCCCTTTG
CTGTTTGAGAACATTAATATGGAGATAAAGCTGGTGGTTTACACTTTGCTAATATCTTAGAAGATACAGGCAATAGACAAAAATAGGAGGATATAGAAAC
AGGGAGCTTGGCTCTGTTAATCTTCAACTTCAGCTTAATTGTGGCTCATTTCTAAACTGTCACTAAGAAACCTGGATTGTGTTCACTTGTTCAGTGTTTT
ATTTGAATGAGCAAGTTATGGCAGTAGGGCATCTTTAATCTGTAGTCTCAGAACTGACAGGCTAAAAGGAACACAGGAATAGTAGTGTGTAGTAGGGAAT
GGTTTAAAAAAAAAAATTAGCCAGGCACAGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCTGGCAGATCACCTGAGGTCAGGAGTTAGA
GATCGGTCTGGCCAACATGGTGAAACCCTGTCTTTACTAAATATACAAAAATTAGCCAGGCGTGGTGGCACATGCTTGTAATCCCAGCTACTCCGGCGAC
TGAGACAGGAGAATTGCTTTAACCCGAGAGGCAGAGGTTGCAGTGAGCCGATAGCGGGCAATTGCACTCCAACCTGGGCGATAGAGCGAGACTCTGTCTC
AGAAAGCAAAAAACAAACAAAACATTGACTTTGTCAGGAATTAGCTACTTCATGATTGAGGGCATTAAGGGAAATGAGGCTGGCTTTTTACTTGTAGTAC
TCTACAACAGTAGGAAAACATGTCTAGTCTTTCTGGAGGGGCTAATGGGAAGAATTGCAAGAACTGCTTAGAGAGTGAGAGATGGGATGAGGCAGGACAA
GAGGGTGTTCCAGCATACATCATTTTCTCCTTAAAGAACCAACTTCTCTGTCTTCTTTCCATTTGGAGTTATAGGTATTGTTCTAAGGCCTCCAGATTAT
TCAGTCCTTATGCCTTGTAGCTTTTTGGAAAAAGAGGGTCTTTGGAGGCCAAGCAGGCTGGCTGGCGGAATCATGGCTCATGCTGGGCTGGCTAGTTTTT
CCCTTAATTCTTGCTTCTCAGATGTATGTCCCTGGGAAGCTGCATGATGTGGAACACGTGCTCATCGATGTGGGAACTGGGTACTATGTAGAGAAGACAG
CTGAGGATGCCAAGGACTTCTTCAAGAGGAAGATAGATTTTCTAACCAAGCAGATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACA
GGCCGTCATGGAAATGATGAGTCAGAAGATTCAGCAGCTCACAGCCCTGGGGGCAGCTCAGGCTACTGCTAAGGCCTGAGAGTTTTTGCAGAAATGGGGC
AGAGGGACACCCTTTGGGCGTGGCTTCCTGGTGATGGGAAGGGTCTTGTGTTTTAATGCCAATAAATGTGCCAGCTGGGC

Expression



Full and truncated open reading frames discovered in TCONS_00168220

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.