Detailed information on ENST00000552341

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfami... protein coding ENST00000552341 531 277 UTR3 Trans
ENST00000450928 antisense antisense ENST00000552341 506 296 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding ENST00000552341 533 300 CDS Trans
ENST00000549365 DNA-damage regulated autophagy modulator... nonsense mediated decay ENST00000552341 594 304 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000552341 561 295 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000552341 656 295 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000552341 502 286 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000552341 519 288 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000552341 534 274 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000552341 534 274 UTR3 Trans

Sequence

>ENST00000552341 (1980 nt)
CTCTTCGTTAAGTCGGCCTTCCCAACATGGCGCAGTCTATTAACATCACGGAGCTGAATCTGCCGCAGCTAGAAATGCTCAAGAACCAGCTGGACCAGGA<br />AGTGGAGTTCTTGTCCACGTCCATTGCTCAGCTCAAAGTGGTACAGACCAAGTATGTGGAAGCCAAGGACTGTCTGAACGTGCTGAACAAGAGCAACGAG<br />GACGGAATTTCGCTCTGTCGCCCAGGCTGGAGCGCAATGGTGAGATCTTGGCTTACTGCAACCTCCGCCTCCCGAGTTCAAGAGATTCTTCTGCCTCAGT<br />CTCCCGAGTAGCTGGGACTTTAGGTACGCGCCACCACGACCGGCTAATTTTTGTATTAATAGTAGAGTTGGGGGTTTCACCATATTGGCCAGGCTAGTCT<br />CGAACTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTAGGATTACATTACAGGCGTGAGCCACTGCCCCCGGCCAAGAATACTCTTATTA<br />CACACTTTGTAGCTCTTTTATCTGACTTCACACCAACATCCAGCTAATGTCTTGTGAACACCAAGGAGTATGTATAGTTGAGATGTAATATTTCCCTTTG<br />CTGTTTGAGAACATTAATATGGAGATAAAGCTGGTGGTTTACACTTTGCTAATATCTTAGAAGATACAGGCAATAGACAAAAATAGGAGGATATAGAAAC<br />AGGGAGCTTGGCTCTGTTAATCTTCAACTTCAGCTTAATTGTGGCTCATTTCTAAACTGTCACTAAGAAACCTGGATTGTGTTCACTTGTTCAGTGTTTT<br />ATTTGAATGAGCAAGTTATGGCAGTAGGGCATCTTTAATCTGTAGTCTCAGAACTGACAGGCTAAAAGGAACACAGGAATAGTAGTGTGTAGTAGGGAAT<br />GGTTTAAAAAAAAAAATTAGCCAGGCACAGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCTGGCAGATCACCTGAGGTCAGGAGTTAGA<br />GATCGGTCTGGCCAACATGGTGAAACCCTGTCTTTACTAAATATACAAAAATTAGCCAGGCGTGGTGGCACATGCTTGTAATCCCAGCTACTCCGGCGAC<br />TGAGACAGGAGAATTGCTTTAACCCGAGAGGCAGAGGTTGCAGTGAGCCGATAGCGGGCAATTGCACTCCAACCTGGGCGATAGAGCGAGACTCTGTCTC<br />AGAAAGCAAAAAACAAACAAAACATTGACTTTGTCAGGAATTAGCTACTTCATGATTGAGGGCATTAAGGGAAATGAGGCTGGCTTTTTACTTGTAGTAC<br />TCTACAACAGTAGGAAAACATGTCTAGTCTTTCTGGAGGGGCTAATGGGAAGAATTGCAAGAACTGCTTAGAGAGTGAGAGATGGGATGAGGCAGGACAA<br />GAGGGTGTTCCAGCATACATCATTTTCTCCTTAAAGAACCAACTTCTCTGTCTTCTTTCCATTTGGAGTTATAGGTATTGTTCTAAGGCCTCCAGATTAT<br />TCAGTCCTTATGCCTTGTAGCTTTTTGGAAAAAGAGGGTCTTTGGAGGCCAAGCAGGCTGGCTGGCGGAATCATGGCTCATGCTGGGCTGGCTAGTTTTT<br />CCCTTAATTCTTGCTTCTCAGATGTATGTCCCTGGGAAGCTGCATGATGTGGAACACGTGCTCATCGATGTGGGAACTGGGTACTATGTAGAGAAGACAG<br />CTGAGGATGCCAAGGACTTCTTCAAGAGGAAGATAGATTTTCTAACCAAGCAGATGGAGAAAATCCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACA<br />GGCCGTCATGGAAATGATGAGTCAGAAGATTCAGCAGCTCACAGCCCTGGGGGCAGCTCAGGCTACTGCTAAGGCCTGAGAGTTTTTGCAGAAATGGGGC<br />AGAGGGACACCCTTTGGGCGTGGCTTCCTGGTGATGGGAAGGGTCTTGTGTTTTAATGCCAATAAATGTGCCAGCTGGGC

Expression



Full and truncated open reading frames discovered in ENST00000552341

In silico ORF/peptide predictions
>peptide 1 (99 aa)
MLGWLVFPLILASQMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA

>peptide 2 (94 aa)
MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEDGISLCRPGWSAMVRSWLTATSASRVQEILLPQSPE

>peptide 3 (66 aa)
MSSLSGGANGKNCKNCLESERWDEAGQEGVPAYIIFSLKNQLLCLLSIWSYRYCSKASRLFSPYAL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT028442 (Evalue: 3.0E-160)

Best hit to Swiss-Prot:
sp|Q9WU28|PFD5_MOUSE (Evalue: 3.0E-39)