| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000427746 | holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) | protein coding | ENST00000553169 | 508 | 280 | UTR5 | Trans | |
| ENST00000448612 | WD repeat domain 27 | protein coding | ENST00000553169 | 565 | 293 | CDS | Trans | |
| ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000553169 | 537 | 289 | CDS | Trans | |
| TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000553169 | 500 | 293 | UTR5 | Trans |
>TCONS_00109011 (757 nt)
GCACTAAAAAGCTTGGAATAGGTATGAATCTATTGTGTATATACACATATATATACGTTGGTAAAAATGTTGAAATATGCTATGGGACTCTTTAAAAAGA
GTAATGAGGCCTGGCGTGGTGGTTCACGCCTGTAATCCCAGTACTTTGGGAGGCCAGGCGGGCGGATCACAAGGTCAGGAGTTCAAGGCCAGACTGACCA
ATGTGAGATGGTGAAACCCTGTCTTTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCACACCTGTAATCCCAGCTGCTTGGAAGGCTGAGGCAGG
AGAATCACTTGAACCCAGCGGGTGGAGGTTGCAGTGAGCCGAGATTGCCCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCAATCTCAAAAAAAAT
AATGAAACTGATGCTCTCTTTATGCTTCGTTTGTCTTAGATATTTGGTTCCCGGGTAAGAGTTGACTCTACAGCAAAGGTTGCAGAAATAGAACATGCGG
AAAAGGAAAAAATGAAGGAGAAAGTTGAACGTATTCTTAAGCATGGAATAAATTGCTTTATTAACAGGCAATTAATTTATAATTATCCTGAACAGCTCTT
TGGTGCTGCTGGTGTCATGGCTATTGAGCATGCAGATTTTGCAGGTGTGGAACGCCTAGCTCTTGTCACAGGTGGTGAAATTGCCTCTACCTTTGATCAC
CCAGAACTGGTGAAGCTTGGAAGTTGCAAACTTATCGAGGAAGTCATGATTGGAGAAG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.