Detailed information on ENST00000554208

lncRNA-RNA interactions

Number of interactions: 17

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000554208 598 247 UTR3 Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000554208 539 253 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000554208 572 257 CDS_UTR Trans
ENST00000517408 antisense antisense ENST00000554208 524 246 noncoding Trans
ENST00000569455 cadherin 13 processed transcript ENST00000554208 521 256 noncoding Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000554208 540 246 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000554208 609 245 UTR5 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000554208 615 248 noncoding Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000554208 613 246 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000554208 613 246 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000554208 613 246 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000554208 598 247 UTR3 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000554208 631 248 UTR5 Trans
TCONS_00190276 transmembrane protein 144 novel protein coding ENST00000554208 633 248 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000554208 629 265 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000554208 575 246 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000554208 617 248 UTR3 Trans

Sequence

>TCONS_00234854 (2457 nt)
ATTCTTTATCCGGAATTTCAAGGGCCGCCGGAGGGCTGTCGCTTCTGCAGTGCGTAGGAGCGGCCGGGGCGGGAGGCTCCGCGGAGCCGAGGCGTGGAGA
ATAAGAAAGCCTTGAGTTTTGTGAAAAACCGGAGAAGAGAAACTAAAAGGACAGTAGAAAAGGCTTTTCCAGTTTGCATAATGTAAGTTCTTTTCACTTT
TCTTGGCTTGAATTCTGCCTTAGCTGACAAAGCTGTTTCTATGGAAACAAATAGTTTAACCTCTTAGAATGTCAGAGGAATGCTGATCACTTAAAATGAG
ACTTCCCAGCTGCTGGTCAAAGGGCATTACTTGCTGGAGAAAGAGGGGAAGGATGAATTTAAAAAATTCTAGAGTTCTGGACACTAGTGTAGACTGAACA
TGTTTATGCGTATGAAGTATATCTCTTCTATTTTACTCTGCCTAAAAATTAAGATACTGGTAATATAGGAAATTGGATTTCTGCTGACCTGTCTTGATTC
TCAGCTCTTAAACAAATGGTTCTATTCGTTGGTACCCTTTTCAGTGGGTCTGTACCCTTTAGGCTATTTCAGTCCCTCCAGTCTCAATCATTTGCACTTG
TTGTGAAGCTTATTTAGCTTCCCATTGCCCCCTTCTCCCGCAACTAAAACCCTTTCTCCCTTACTAGTTTGAGGTTAGCATTGAAACAGCTTCGGCATGC
CAGCCTGAAAATTTTTCTTGCTTTGTGGACTATGTAAAGATTTTTGTATTTGTGTTCGTTTTCTGGCAGGGATGGGAGCAGGGATTCTGATGAGGATTTG
AAATGTAGTCCTTTGAAGCTTTCTTTCTTTCTTATTTTTTTTTTAAACTTATAATTGGCAAGTTGAGAAGAAAAGAATTAGGGCCAGTAACTGCCTCTGC
TGTCTTCATAAGATGGCCTGTTATTTACACACAATGAGGTAATTCTCTAGTTCAGTCATTTACCAGCTTCTGAATTGTCAAAGGACTTTTTTTTTTTTTT
TTAAAGAGAGGGAGAGTGCAATTGCTTTGGACTGGGAGGACTTTTTCACTTTTATGATGTATATAGACTACATGTATGGGCTAGAGTATTTGTGGAGTGC
CTGCTTAAAAATTATAATCTTAATGCTAAAACTATAGGATACAGTATAATGTTTCTTTAATTCTGGAAGAACTTTAGGATCTTTCATTGCCTTCATTAAA
TTAACTTGTGAGCATTATAGAGTTTTTGGAGTGTTAAATGGTGAAGTAATTATTTAACAGGATAGTCTGGAAAGATTTCTTGTAGAATTAGGGACTTGAG
GGAGGTCTTGAAGGTAGAAATCAATGGAAAAGTAGTTCATCAGTCATTTGGGCAGAAAGATGGGATAGACACAAATGAGGAAGGTAAATTAGAAGGCTCA
TGCAGGTGCGTAGTAAAAGATATAGCTAGAAATCTTGGATTCATTTTTTGAGTTTGAAGTTTATTCTCCAGGTAGTGTGAAAGCCATCAGAAGTTCTGAA
CAGAGGAGTGGTTTGCTCATATACTTAATTAAGCAAACACTTAGCAGGTATCACGGCTATAGAGGTCAACAAGACGGATCCCTGCCAATTAGATAATTTA
CCTGTGTGATCTACAGTTACCTTGAAATTAATGTGTCTAAACCCATATTTCCCTTTACTTCTATCTGATTCTCCTATATTCTCCATCATAATTAGTGACA
TTGTCATCTACCTAATAAGCCAGGGATAGTGGTTAAGAGTGATGGTTCTGGAGTTATACTGCCTAGGTTCATATTCTGAAGCCTTCTGTTGTTTGGCCTT
CTGCTGGGCAATGTTACGGATTCAGAGATGGGTCAGCCTGGTTCCTGACTTCAAGGAGCTTCTAGTCTGATGAGATAGAAAGGCAGAGATATAAATAGCA
GTAGTCCAACTTGATCAAGAATGTGACAGGGATTATAGGATTCCAGAGGACAGTGTATTTGAGCTCAGACTTAAAAGAGTAGGCAAAGATCAGATCCTAG
GCAGTCTGATTCTGGAGGCTTTTCTCTTAAACATGCTGTCTTGGGTAACTGGATGGATGTAGTGACATTAGTTAGAATTGAAAACAGGGAGAGGATTAAA
GAGAATAGGAGATTAAAGGGAAATATGAGTTTAATTTTGGACATATTTCTAGATTCTTGTGGGAAATTCTGATAGATAGAATAATGGTCAGCCGGGCACG
GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCTGGTGGATCACGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAGCCCCGT
CTCTACTAAAAATACAAAAATTAGCTGGGTATGGTGATTGGCGCCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAAGAGAATCGTTTGAACCTGGGAGG
TGGAGTTTGCAGTGAGCCGGGATCGTGCCATTGCACTCAAACTGGACGACAGAGTCTC

Expression



Full and truncated open reading frames discovered in TCONS_00234854

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.