Detailed information on ENST00000554519

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000441159 family with sequence similarity 115, mem... protein coding ENST00000554519 636 360 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, mem... novel protein coding ENST00000554519 636 360 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, mem... novel protein coding ENST00000554519 636 360 UTR3 Trans

Sequence

>ENST00000554519 (813 nt)
GTGTTTTTACAAGAGGCACACAAAAGAGAGACACAGAGAGAAGATGAGAAGACTGAGGCAGACATTGGAATGACGCAACCAGGAGCCAAGGAATGCCTGG<br />ATCCATGGGAAGCAGAAGAGGCTTTCTCACCATGTGATGCATTCTGCTATGTTATGATACAGCAAGAAGGGCCTCACAAGATGTGACCTCTTGTTCTTGG<br />ACTTCTCAGCCTCCAGAATCATGAGAAAAAAAGGCTCAGCACTGTGAAGACTGATTGCCACCTCCCCCTTCCCCAGCAATCTCGTGGAGATCTGGTCAGA<br />GAAGCTGTTCCATCTCCCACAAACCTCGTGGCTCAGAAGCAGAGGTGGAGGCTGCAGACCTCATGTCAGGACTGGGTCGACTAAAATAAAAACAGTCCCC<br />CTAGTCTGGATGCCCTGTGTACCTTGCAACTGAGAAAATGTGAATGAAACCATGAAATACTATGCAGCCATAAAAAGGAATGAAATTATGTCTTTTGTAG<br />GAACATGAATGGAGCTAGAAGCCATTATTCTCAGCAAACTAACACAGGAACAGAAAACCAAACACCACATGTTCTCACTTATAAGTGGGAGCTGAAGAAT<br />GAGAACCCATGGACACAGGGAGGGGAAAAACACACAGGGGCCTATCAGGGGGTGTGGTGGGGGGAAGGAGAGCATTGGAAAAATAGCTAATGCATGCTTG<br />GCTTAAGTTCTACGTGATAGGTTGATAGGTGCAGCAAACCACCATGGCACACGTTTACCTATGTAACAAACTTGCACATCCTGCACATGTACCCCAGAAC<br />TTAAAAATAAAAA

Expression



Full and truncated open reading frames discovered in ENST00000554519

In silico ORF/peptide predictions
>peptide 1 (61 aa)
VFLQEAHKRETQREDEKTEADIGMTQPGAKECLDPWEAEEAFSPCDAFCYVMIQQEGPHKM

>peptide 2 (61 aa)
MNGARSHYSQQTNTGTENQTPHVLTYKWELKNENPWTQGGEKHTGAYQGVWWGEGEHWKNS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT038162 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 7.0E-13)