Detailed information on ENST00000554519

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000441159 family with sequence similarity 115, member C protein coding ENST00000554519 636 360 UTR3 Trans
TCONS_00225245 family with sequence similarity 115, member C novel protein coding ENST00000554519 636 360 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, member C novel protein coding ENST00000554519 636 360 UTR3 Trans

Sequence

>TCONS_00225248 (812 nt)
GTGTTTTTACAAGAGGCACACAAAAGAGAGACACAGAGAGAAGATGAGAAGACTGAGGCAGACATTGGAATGACGCAACCAGGAGCCAAGGAATGCCTGG
ATCCATGGGAAGCAGAAGAGGCTTTCTCACCATGTGATGCATTCTGCTATGTTATGATACAGCAAGAAGGGCCTCACAAGATGTGACCTCTTGTTCTTGG
ACTTCTCAGCCTCCAGAATCATGAGAAAAAAAGGCTCAGCACTGTGAAGACTGATTGCCACCTCCCCCTTCCCCAGCAATCTCGTGGAGATCTGGTCAGA
GAAGCTGTTCCATCTCCCACAAACCTCGTGGCTCAGAAGCAGAGGTGGAGGCTGCAGACCTCATGTCAGGACTGGGTCGACTAAAATAAAAACAGTCCCC
CTAGTCTGGATGCCCTGTGTACCTTGCAACTGAGAAAATGTGAATGAAACCATGAAATACTATGCAGCCATAAAAAGGAATGAAATTATGTCTTTTGTAG
GAACATGAATGGAGCTAGAAGCCATTATTCTCAGCAAACTAACACAGGAACAGAAAACCAAACACCACATGTTCTCACTTATAAGTGGGAGCTGAAGAAT
GAGAACCCATGGACACAGGGAGGGGAAAAACACACAGGGGCCTATCAGGGGGTGTGGTGGGGGGAAGGAGAGCATTGGAAAAATAGCTAATGCATGCTTG
GCTTAAGTTCTACGTGATAGGTTGATAGGTGCAGCAAACCACCATGGCACACGTTTACCTATGTAACAAACTTGCACATCCTGCACATGTACCCCAGAAC
TTAAAAATAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00225248

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.