Detailed information on ENST00000554631

lncRNA-RNA interactions

Number of interactions: 43

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000232564 guanine nucleotide binding protein (G protein), beta polypeptide 4 protein coding ENST00000554631 515 301 UTR3 Trans
ENST00000242057 aryl hydrocarbon receptor protein coding ENST00000554631 552 294 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding ENST00000554631 580 298 UTR3 Trans
ENST00000380641 centlein, centrosomal protein protein coding ENST00000554631 615 301 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding ENST00000554631 580 298 UTR3 Trans
ENST00000448214 antisense antisense ENST00000554631 608 296 noncoding Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay ENST00000554631 552 294 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000554631 571 281 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000554631 596 298 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000554631 572 306 UTR3 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000554631 636 293 UTR3 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000554631 636 293 UTR3 Trans
TCONS_00030165 antisense novel protein coding ENST00000554631 608 296 UTR5 Trans
TCONS_00051891 RNA binding motif, single stranded interacting protein 2 novel protein coding ENST00000554631 560 305 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000554631 573 299 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000554631 601 298 UTR3 Trans
TCONS_00117136 CBP80/20-dependent translation initiation factor novel protein coding ENST00000554631 526 303 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000554631 614 260 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000554631 662 313 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000554631 662 313 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000554631 662 313 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000554631 662 313 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000554631 662 313 UTR3 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding ENST00000554631 629 285 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000554631 629 285 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000554631 608 295 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000554631 608 306 UTR3 Trans
TCONS_00163095 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000554631 519 302 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000554631 632 302 UTR3 Trans
TCONS_00184525 lincRNA novel protein coding ENST00000554631 637 313 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000554631 651 313 UTR3 Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000554631 639 304 UTR3 Trans
TCONS_00211163 opioid growth factor receptor-like 1 novel protein coding ENST00000554631 525 304 UTR3 Trans
TCONS_00220258 aryl hydrocarbon receptor novel protein coding ENST00000554631 552 294 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000554631 615 309 UTR5 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000554631 600 292 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000554631 648 291 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000554631 659 299 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000554631 659 299 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000554631 631 300 UTR5 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000554631 611 304 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000554631 611 304 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000554631 654 303 UTR5 Trans

Sequence

>TCONS_00252827 (1708 nt)
ACTCAGGAGCAGGGAGACAGCGGGCGCGCGCGCGGAGGCCGGAGAGGCGTTTGCGGCCCAGCGCCTGGACTGGACCTTGGCGTTGGGCCGCAGTTGCCCG
GAGTTTTTGGGGCCCCCGGGAACCCGCGCGCCGAGGCCGGCTAAGTTTGGCAGACTCTCTGAGCTCTCGGAATTCGACTGCCTCCATTGTTGCTCCTTCT
GGCACCCACAGACCGTAACGTGGCCGTAATTGTTTCCCGGAGAGCTTAGCTTCCCTCTGAGCACCTCCCTCCCCTTTTTAAAGTACCTTCCCACTCGCCT
GCGTTTCCTCGCGTTAGTGGTGCAGGGGCCTCCGCATTTGGGGAAATAACAAACACCCACTTCCGCCCCCCACCCCAACCGGGATCCCCAGATAATGAGA
AATAGATGGTGGCCCTCTGTTTGTAAGCTGTTCATTTGCATAGGTCGGAACCGCGCACCACAGCTTGAAGCTAGGAATTAAAATATCGGTGGGAATTAAA
TAAGTGGCTGGCTTAAAGAACATCTTCTTAATTTATCCCCAAATGTAGACATCTCTTCAGTGGACCCCCTGATAGGCCGGTTTGCTCCAGGTGAGGTGTG
CTCACAGCAACTGCAACCGTGTTTCTTTCAGACCATGGGCGTGAGCAGAACCTACTATGCGCCCCTGCTGCCTGGGCTGTGCTGTTCAGTTTGGGGCCAC
CAGCCCCACATGGCTCCTGAGCACTTAAAGTATGGCTAGTCGGAATCGAGATATATGCATTCTTTACCAAATAATGTTCAAAAAATTGTTACATGTTGAA
GTGATAAACTTTTTCCATATATTGGGATAAAAGTTTTATTTGTTTATTTTTTAGTGTGGGTTCTACAGAATTTTAAATGTCACCTGTGGCCTGCATTATA
TTGCCATTGGGCAGGCTGATCTAGGGCTTGCATGCCTGTGATCCTTAGGTGCACCCTGTGAGGTAGGTGCTTTAACTGTGTGCACCCTGTGAGGTAGGTG
CTTTAACTGTGTGCACATTGTGAGGTAGGTGCTGAAACTGCTTCCTGTTTTTTTTTTTTTTTTCTTTTGAGACGGAGTCTCACTCTGTCTCCAGGCTGGA
GTGCAGTGGTGCGACCTGGGCTTACTGCAATCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGGGCACGC
CACCACACCCAGCTAATTTTTGTATTTTTAGAAGAGACGGGGTTTCACCATGTTGGCCATGATGGTCTCGATTTCTGACCTTGTCATCCGTCCGCCTTGG
CCTCCCAAAGTGCTGGGATTACGGGCGTGAGCCACCGTACCCAGCCTGCTTCCTGTTTTAACAGACGAAGAAATGGAATAACTTCCAACAACACAGGTTG
GAGCTGAAGGAGTGCCCAGGCTGCGGATGGAGGAAGGACGTGCTCGGGAGAAGGTGAAGATGGGAGAGAAGCAAGATCTTCTGTGTTTGGACCAAGGACA
CATTTCCTTACTCCATAGCAGCTGTGCATGGAATATGGATGTGTGGTCTGGATGTACAGACACCATTTTGGACCATAAAGACAAGGACGATTGTCTAAGG
ATGACACAGCCAGAGCACTGAGAGTGGCGAGAAGGACAGGGGAGCTGCTGTGCCAAGCAGGACTGTCTCTCTTAAGAGAAAAATAAAATTTATTGGTGTT
TAAACCATT

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.