| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000475187 | THO complex 5 | retained intron | ENST00000555707 | 526 | 299 | noncoding | Trans | |
| ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000555707 | 593 | 291 | CDS | Trans | |
| ENST00000517408 | antisense | antisense | ENST00000555707 | 570 | 295 | noncoding | Trans | |
| TCONS_00001594 | lincRNA | novel protein coding | ENST00000555707 | 607 | 292 | UTR5 | Trans | |
| TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | ENST00000555707 | 624 | 301 | UTR3 | Trans | |
| TCONS_00070307 | pecanex homolog (Drosophila) | novel protein coding | ENST00000555707 | 615 | 289 | UTR5 | Trans | |
| TCONS_00075813 | forkhead box N3 | novel protein coding | ENST00000555707 | 662 | 293 | UTR5 | Trans | |
| TCONS_00075827 | forkhead box N3 | novel protein coding | ENST00000555707 | 662 | 293 | UTR3 | Trans | |
| TCONS_00107864 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | ENST00000555707 | 652 | 293 | UTR3 | Trans | |
| TCONS_00107867 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | ENST00000555707 | 652 | 293 | UTR3 | Trans | |
| TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000555707 | 575 | 295 | UTR5 | Trans | |
| TCONS_00123889 | ribosomal protein SA pseudogene 58 | novel protein coding | ENST00000555707 | 619 | 285 | UTR5 | Trans | |
| TCONS_00123899 | ribosomal protein SA pseudogene 58 | novel protein coding | ENST00000555707 | 619 | 285 | UTR5 | Trans | |
| TCONS_00124891 | zinc finger protein 540 | novel protein coding | ENST00000555707 | 633 | 291 | UTR3 | Trans | |
| TCONS_00173891 | RNA, U6 small nuclear 461, pseudogene | novel protein coding | ENST00000555707 | 604 | 287 | UTR3 | Trans | |
| TCONS_00190276 | transmembrane protein 144 | novel protein coding | ENST00000555707 | 636 | 286 | UTR3 | Trans | |
| TCONS_00213191 | tubby like protein 4 | novel protein coding | ENST00000555707 | 608 | 291 | UTR5 | Trans | |
| TCONS_00224726 | caldesmon 1 | novel protein coding | ENST00000555707 | 524 | 294 | UTR3 | Trans | |
| TCONS_00224728 | caldesmon 1 | novel protein coding | ENST00000555707 | 524 | 294 | UTR3 | Trans | |
| TCONS_00233179 | BCL2/adenovirus E1B 19kDa interacting protein 3-like | novel protein coding | ENST00000555707 | 604 | 298 | UTR3 | Trans | |
| TCONS_00237103 | cathepsin B | novel protein coding | ENST00000555707 | 602 | 294 | UTR5 | Trans | |
| TCONS_00249092 | transmembrane protein 245 | novel protein coding | ENST00000555707 | 636 | 282 | UTR5 | Trans | |
| TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000555707 | 618 | 294 | UTR5 | Trans |
>TCONS_00252827 (1982 nt)
GTCGGCGCCATTTTGTCTCGGCAGCGGTGGCCGTAGCTCCATCGCATTTTATGTTTCTGGCGAGAAGGGAACGGAGTTTTCATCAGGTAGATTGGTTTTT
GTGCGGCCGTCCTCCACCGTTTCCTCCAGGACAGCACCTAGTCGTGGCCGGAGGAGTCTCAGAGCTGTCAGAAAGAATAAGACTGATTTTATGGGAAAAT
TAAGCAGATGCTCCAGTTTGAGAAACCTGGATCTGCGATCTGTTTGTGGTCTCTATGAATAAAGAAAAGCAAATAGAATCTTATCAGATAAGTGCTTTTA
TAAGTCTAAATATATTCTTTGGAATCTCTAAAGCAAAACTTTTAAACTTTTTTTTTTTTTTTTTTTTTTTTAGGTACCAGCATCAAGATGATTTATGGTA
ATAAGGTACTCAGTCTTTGCTTAAAATAAATTTTACGTTTATCAAAGTAAAATTTACCAGCTTTTTTTCCTAAAGAGGCTAGTCATATCTCATCAGTGGT
TACAAAGTATCCTTACAATTGAACCTACATTTGTTAATCCTGTTCAGTGTGTATGAAAATCACTTGGTGGCCGGGCATGGTGGCTCACGCCTGTAATCCC
AGCACTTTGGGAGGCCAAGGCGGGCAGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCTAATATAGTGAAACCCCATTTCTACTAAAAATGCAAACAT
TAGTCAGGCATGGTGGCAGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGACTCTCTTCAACCCGTGAGGCAGAGGTTGCAGTGAGTCGAG
ATCATGTCACTGCACTTCAGCTTAAGCAACAGAGCGAGACTCCATCTCAAAAAAAGAAAAGCACGTCACTCGATGTTCTTTCTTTCATAAGAGTTGAAGA
ACTAGGTATATCTGCTTATATTATGGCATCTATAGTAGCTTAGCTGCTCATATTTGGGTCTCTTTAGAACCAGTGTCTTTCAAAGAGGGTTTTAACTATG
CTGGTGTAAATTTTAAGAATAGATACATTCAAAGAAGAATTCAACATTCATGTGACATTCATACTTTGGAACTTTGGGAAAGTATAGGAATGACCATAGA
TTGGCTTAGGGATAGTCAATTTACCTGTCTGTAAATGGATCCAATTTAGTATTGTTCCTGTATTTTTCTAAGACCAACACTTGTGTCATTCACAGTTAAA
TATATGAGTTGTGGCCAGGCCCGGTGGCTCATGCCTGTAATTTCAGCATTTTAGGAGGCTGAGGTGAACAGATTGCTCAAGTCCAGGAGTTCAAGACCAG
CCTGGGCAACATAGTGAGATGCGGTCTCTACAAAAAATTTTTAAAAGTTAGCCAAGCATGGTGGTGCTTGCCTGTGGTCCCAGCTACTTGGGAGGCTGAG
GTGGGAGGATTGCTTGAGCCATATGCTCTAATATATTTTAAAATACATATTTTAAATATATTTTGAGTGGTAAAATGTAGCAGATAATGTTACATAAAAG
AAGCCATGGTAATGACATGACATTACTGGTTTTGAGTTGTTTGTGTAGTAGTTAGCTATTAATACTCAGGTATAATGATTTGCTATTTAAACTACACAAA
TGCTCAAAGTCCAGCGATACCCTGCACCCAAATTCAGTGGCTAGATTACCTTCTTAGGAAAGCACAACACTTCAATGGAGTGACACTGGCATGAGTCCAC
TAGAGGGTGTGTATACATGGCCTGAGTTCAAATTGTTCCTGCTGTGAGTACTGCTTTTCAGCTTCAAGTTATTCTTATCGGCCACAGTACTGTTTATTCC
ACTTAGTAACAGTTCTGTTTACAGAGCACTTTAACATAAATTCTGATTTTTAACATGAAAGCTGTCTGATGTTGGTATTTTTATTTTAATCTTTAGAGAT
CAAGAAATTTTTTTAGTGACAGAATAGGGACTTTATTGATCCTTAAATCCGCCCCTCACCACAATAAAGGAAAAAAGCAAAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.