Detailed information on ENST00000556248

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000556248 532 277 UTR3 Trans

Sequence

>ENST00000593250 (651 nt)
AGGAATTAAAAGTACTTTTATACCTACTTTCCCCCAACATTCTTTGAAGAGGGAAGGTATACATTTCTGTGAAAGACCTTAGGTATTTCAAATTCTTCGC
GAGTTAGTTCAAGTGTGTAAAATGGAAGACGGGGCCAGGCGCGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCCAGGCAGGTAAATCGCTTGA
GGCCAGGAGTTTGAGATCAGCCTGGGCAACATGGCGAAACTTCATCTCAACAAAAAACACAAGTTAGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGC
TACTTGGGAGGTTGAGGTGGGAGGACTGCTTGAGCCCAGGAGGCTGAGGCTGCAGTGAGCCTTGATCATGCCACTGCGTTCCAGCCTGGGTGACAGAGCG
AGACTCAAAAATCCAGTTACAACACAGGGATCACAACAAACACAACCGCCACAGAAGCACTATGGCATTACTTCTCCTATCAGCTTAGCAGCCCCCAAGG
AGACTGACTGCGTACTTACACAGAAACTAATTGAGACATTGAAACCCTTTGGGGTTTTTGAAGAGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGG
AAAACTAAATAACCTGGTAAAAGAGTGGATACGAGAAATCAGTGAAAGCAAG

Expression



Full and truncated open reading frames discovered in ENST00000593250

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.