Detailed information on ENST00000556379

lncRNA-RNA interactions

Number of interactions: 53

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000556379 624 294 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000556379 641 295 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000556379 657 299 UTR3 Trans
ENST00000375234 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000556379 584 304 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000556379 584 304 UTR3 Trans
ENST00000450928 antisense antisense ENST00000556379 529 302 noncoding Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000556379 612 295 noncoding Trans
ENST00000548404 transcribed_unprocessed_pseudogene processed transcript ENST00000556379 542 277 noncoding Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000556379 502 260 UTR3 Trans
ENST00000556539 signal transducer and activator of transcription 2, 113kDa processed transcript ENST00000556379 655 293 noncoding Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000556379 524 266 UTR3 Trans
TCONS_00013935 platelet-activating factor receptor novel protein coding ENST00000556379 600 299 UTR3 Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000556379 655 293 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000556379 655 293 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000556379 655 293 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000556379 655 293 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000556379 655 293 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000556379 655 293 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000556379 655 293 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000556379 655 293 UTR3 Trans
TCONS_00061180 golgin A2 pseudogene 5 novel protein coding ENST00000556379 542 277 UTR5 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000556379 628 291 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000556379 628 291 UTR5 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000556379 635 295 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000556379 657 299 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000556379 657 299 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000556379 657 299 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000556379 612 300 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000556379 612 300 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000556379 620 263 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000556379 620 263 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000556379 622 299 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000556379 622 299 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000556379 622 299 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000556379 622 299 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000556379 622 299 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000556379 622 299 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000556379 622 299 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000556379 601 299 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000556379 646 300 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000556379 687 301 UTR5 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000556379 623 299 noncoding Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000556379 628 295 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000556379 618 300 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000556379 624 294 UTR3 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000556379 622 295 UTR5 Trans
TCONS_00175246 interleukin 20 receptor beta novel protein coding ENST00000556379 628 299 UTR5 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding ENST00000556379 611 292 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding ENST00000556379 611 292 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding ENST00000556379 627 295 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000556379 623 300 UTR3 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000556379 641 295 UTR3 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding ENST00000556379 599 289 UTR3 Trans

Sequence

>TCONS_00251973 (2851 nt)
GACTGGGGCAGCCCAGAACACTGGGGAGACTAGATCGATAGGGCTGCACAGAGGTGGCACAGTTGTGCCAGAGGTAGCAGGGACAGGAGGGCTGGCAAGG
GAGGGTCCAGGGCTAGGGGATTCGGAGTGGCTTCAGGCGGACCACGTGGCTACCTTTTTTCCAGGGCCAGACTTTGGCAGCGTGTAAGGTCTGAGGACAG
GGGCACCGGAGGCCGAGGATGAGAGGCCAGTGCCTGTTTCCAGGCAGCCAGGGCCTCAGAAACTCCGGCCGGAGCACTCACCCGTCGGTGGAGGCCGTTA
CCAGGGCCACCTTATTTGCGAGCGGGTCCCGGCGGGTCATCCCGGAGCTGGCCATCCGCACCGAATTCCAAGCCCGGGCACAGAGGCCTAGCAGCCCCGC
CTTGTGCATGGATCAGACCAGCAAGTGCCACTTCGGATAAACCCTTTGGACTCCTAACTCCAATCAGGTGTCTGCTTTGTTGAGGACTCACAGACACAGT
CTCCTTTCTTCAAGATCTTTACAATGCAAGACCTCACTAACACACAGGGATGGTCTCCCAGAGGGTCTGTGCTGTTCCTTCACTCAGAACATCAAGATGC
ACTGAAGTAAGGATCCTCTATTCTACAGTTCCTGCTAGCTGAGCTATTCCATGGGGGCTTCAGCAGGAAATTCCAAGGTTGGCTTTGACAAGCTAAGGCC
GGCTGGTGGAGCACATCGAGTTCTGGAGGTTCATGTGTGTTTTCATGAAGATCTGTCTGCCCGTAGCAGATAAAGAGTTGTTGCCCCACTCCTCCTGGGG
TCTTCTATTTTCCTGGGAGGAATTTCTGGATTAACTGAACACACACACACACACACACACCCTTTTGAAGCATCAACAGTAATTCTGAGTTCTTAGGGAC
AATGCAGATTAAATCCACAATAAGAAAGACAACTATGGCCAGGTGTGGTGGCTCACGCCTGTAATCCCAGAACTTTGGGAGGCTGAGGCGGATGGATCAC
CTGAGGTCAGGAGTTAGAGACCAACCTGACCAACATGGAGAAACCCCGTTTCTACTAAAAATGCAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTAATC
CCAAATACTCGGGAGGCTGAGGCAGGAGAATCACTTAAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCGCCATTGCACTCCAGCCTGGGCAAGA
AGAGCAAAACTCCATCTCAAAAAAAAAAAAAGAGTACTATTGATCCAGAGGTGACCAGACTAGCCTCACTGGAGATAATAGGTGACATTATTATGCAAAG
TGGTTTCAGTTCCCTTGTCTTGTTTTTGGAATAGTATAAGAGGCCTACAATACGAATAAATAAGGCCCATCACAAGCCTCACCAAAGGACAAAACTAATC
CACTTCTGAAGAAGGCTCTTTGTTGGGCCAGATCAAATCCTTGGACAGAACTGTACTCTTAATCTCTGTAGTGAAAGTGGGGGGTAGTTTAAGAATTTAT
TAACCTTCTACCTTGAGCAATCCCTCAGAAGTAAGAGGTGTCAGGCCTCTGAGCCGAAGCTCAGCCATTGTAACCCCTGTGACCTGCACATATATGTCCA
GATGGCCTGCAGGAGCCAAGAAGTCTGGGGCAGCTGAAAAACCACACAAGAAGTAAAACAGCCAGTTCCTGCCTTAACTGATTAACCAACATTACAACAT
TCCACCATTGTGACCTGTCCCTGTCCTACCTTAACTGATCAATCGACCTTGTGACAGTCTTCTTCTGGACAATGGGTCTTATCATCTCCCCACCATGTAC
CTTGTGACCCCCTCCTCTGCTAACAATAGATAACCACTTTTTACTGTAATTTTCCATTACCTACCCAACTCCTATAAAGCAACCCCTTCCCCATCTCCCT
TCACTGACTCTGTTTTCAGACTCAGCCCACTTGCACTCAAGTGAATAAACAGCCTTGTTGCTCACACAAAGCCTGTTGGTGGTCTCTTCACACAGATGTG
CTTGACAAAAGGGAAGGGTGGATTTGTCCTTCTGGTTACATATGTTCTGCTCACTCATTTTGAATTTAATTAAACAAGGATTGCCCTTACCTTTTCATAC
TTTGTAAGAAACCATAAATACTTATGCACCATGATTTTTTTAAAGAAACACTTTTTATTTTGAAGTAATTATAGTCTCATAGGAAGTTGCAAAAGTAGTA
CATAGAGTCCCTGAGTACTCTTCCCCCAGTGGTGACAACTGTAGTATAATATCAATTCTGGGAAATTGACATTGGTACAATACCAAATATACTATGCCTT
TTTCTCTAAGGCATGATGTTGCAGTAGCATCCTTGTACATGTAGCTAGGAGAACTTGTACTAAGCCCAGATAAATAGTTGAAGTACAAGGGCAAGGAGTG
TGTCTTTGATATTTTAATAGAAATCACCTATTGCCCTCTAGAAAAGCTGTACCCTTTTCCAGTGGCAGAGAACCTTCCTGAAAGGCAGTCCTGTGTAATG
GTGTCCATTTCATCACACCCTTAAAACACTCAGCTTTAACAAACATGCAGATTTTTGCTGATGTGGGAGAAAATATTAATTATTAATGATATTAAGGTGA
TTATCTTTTCGTATGTTTATAGATATTTGTATTTCTTTTTAAATGAACTGCTCATGACCTTTGTCTACTTTTATTTGGGTTTACTTCTTTCTCATTTATT
CCTATAAACTCTTTATAAAAGGAAATTAACCATTTGATTGTCATATGTTGTGAATATTTTTACCATTTTGACTTTTGAATTTATGTCTTTTTAATGAATT
GTAGAAGTTTAAAATCTTTATGGAATAAATTTATTTAGTTTTTTGTTTATGG

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.