Detailed information on ENST00000557993

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus rec... protein coding ENST00000557993 518 247 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000557993 546 254 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000557993 553 253 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000557993 562 254 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus rec... novel protein coding ENST00000557993 518 247 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000557993 534 261 UTR3 Trans

Sequence

>ENST00000557993 (1482 nt)
GGCGTGCCGCTGCAAACTGGCCTCTGGGCCGGGGGCGAGCAGCCCCCGGGAGGCCGAGTGCATCTGTTGGACCGTGCGAGGAGAAGAAAAAAAATATCGG<br />CCAGAGGAGAGGAACTAACCGAACATTCTTCCTCCCTACCTTATAGAGGGGAGTGGTCATCTACACTAAAGCAAAGTGTTAGGCGCGTCCGTGCGAAGAG<br />ACCACCAAACAGGCTTTGTGTTCCTTATCACAGGAAGAAAATTTTCCTTGACCTTTAGGTGCTTTTATATTCATCTCAAAAACAAAATTCTGAACTCAGG<br />ACTTGGCAAGCTGAAGTGCAATGGCGCAATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAC<br />ATTATAGGCACCTGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGGCAGGCTCGTCTTGAACTCCTGACCTCGT<br />GATCCGCCCACCTTAGCCTCCCAAAATGCTGAGATTGGAGGTGTGAGCCACCGCGCCTGGCCAGTGTGTCCTTTCTTAATTGACAGTGACATTATATCTG<br />CAAAATAGGCTTCATACCTACTGTGTTAGTTTTAGTTTCCTAGGCCTGCTGTAACAAAGCACCACAAATTGGGTAGCTTAGAATAACAGAAATTGTTTGA<br />TAGTTATAAATAAAGGTCAGATGTCTAAAACCAAAGTGTTGGCAGGGCCGTCCCTCTGAAGGCACTGAAAAAAAAATTTCCAGTCCTTCTAATTTCTTGT<br />GGTTCCTTAACTTGTGGCAGCATAACTCCAGTCTTCACATGAAGTTCTTCCTGTGTGTGTATCTGAGTCCTAATATAAGGAGACTAGTCATATTGGATTG<br />GGGTCCATCCTGCTCTGTTAATGACCTCATCTTAGCTGCTGACATCTGTAATGACTCTATTACCAAATAAGGTCACAGTATGAGGTAGTAGGGGCTAGGA<br />CTTTTAACATACGAATATTGGGAGGACACAGTTCAACCCATTAACACCTACTTATACCTTGATTAATTATATGAAAACCATTCAGTGTACAACTGCTTCA<br />AGGATTGAAACCTTGTATGTAGTCCCAGCTACTCTGGAAACTGAGGTAGTAGGATTGCTTGAGGCCTGAAGTTCAAGGCTGCAGTATGCTGATTGTGCCT<br />GTGAATAGCCACTGCACCCCAGCTTGGGCAGCATCAGAATTATAGAGACAGAAAGTAGAATGATGGTTGCCAGGGGTTGCAGGAAGGGCAGCGAGAGGGA<br />ATTACTGTGTAATGTGTACAAGGTTTCAGTTTGGGAAGAAGAAATGAGTCCTGGAGATGGATTACGGTGATGGTTGCACAGCAGTATGAATGTACTTAAT<br />ACTACTGAATTGTATACTCGAAAGGGTTAATATGGTGAATTTTATGTGTATTTTATCACAATAAAAACATTGAAAAATAAAA

Expression



Full and truncated open reading frames discovered in ENST00000557993

In silico ORF/peptide predictions
>peptide 1 (85 aa)
GVPLQTGLWAGGEQPPGGRVHLLDRARRRKKISARGEELTEHSSSLPYRGEWSSTLKQSVRRVRAKRPPNRLCVPYHRKKIFLDL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT041929 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 2.0E-19)