Detailed information on ENST00000558121

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000227155 CD82 molecule protein coding ENST00000558121 623 298 UTR3 Trans
ENST00000355285 adenomatosis polyposis coli down-regulated 1 protein coding ENST00000558121 547 302 UTR3 Trans
ENST00000623752 TEC TEC ENST00000558121 643 300 noncoding Trans
TCONS_00020768 processed_transcript novel protein coding ENST00000558121 616 297 UTR5 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000558121 623 298 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000558121 623 298 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding ENST00000558121 529 300 UTR3 Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding ENST00000558121 554 294 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding ENST00000558121 622 297 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000558121 533 293 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000558121 515 299 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000558121 605 296 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000558121 617 298 UTR3 Trans
TCONS_00150599 four and a half LIM domains 2 novel protein coding ENST00000558121 629 300 UTR3 Trans
TCONS_00160920 protein tyrosine kinase 6 novel protein coding ENST00000558121 605 298 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000558121 615 298 UTR3 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000558121 635 300 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000558121 649 285 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000558121 644 297 UTR5 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding ENST00000558121 611 296 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000558121 622 298 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000558121 656 316 UTR3 Trans

Sequence

>TCONS_00239255 (3337 nt)
CAGGTGTTAATGTAGGCATTAGTGCTCTTTCATTTGTAGAATGAAACGAGCTGCTCAGAGTATTTGAGCCTAAGACAATGTGACTCATGCTTTAAAGGAG
AAAAAAATTCTACCTTTTTTATCCTCTTGAAAATGACTAGTATATAAAAAAGTCAGTGCTTCCCAGCATCTGGCTTTGAGCCTTTGGGCAACTATGTATG
ATAGGCTTTGTTGCAAGGAGTCTGCTGTCAGTCACATTCCCTGACCAAAATCAAACCTTGCCTATGTGGGGAGGTATGTTGATTTTGGTCACAAATGGGA
ATGGTGAGGAGAGATCTCTTTCATCCATCCACCTTTTGGCACCAAACATTCTTCTATTCATCAGGCCTGAATGTATCCATCTTACAGTGTGAATCCTGCT
GTAATTGAAAGGATGAAATAAGATTACCTGAAAGCATTTTGAAAGTGGCAAAGCTGTATAGGCAAATGTATTTGCTATTAATAGTAAATTAATAGAGCTT
TGAAAAAGTATAATTTTGCATTGCAGCAATTTCCAGTTTATGTACTACCAAAAGTAGAGTATCAAGCTTGTTATGGAGTTGAAGCTCTGACTGAAAGTGA
ACTTTGTCGCTTATGGACTGAAAGTTTATTGCATTCCAACAGCTCATTTTATGTTGGGCATATCGATGCATTTACTTCAAAACTTTTTCTACTGGAAGAA
ATTACCTCAGAAGAATTAAAAGAAAAGCTTTCAGCACTCAAGATTTCCAATTTATTTAACATCCTCCAACACATTCTAAAGAAACTAAGTAGCTTGCAGG
AGGGTTCCTACTTGTTATCTCATGCAGCAGAAGATTCTTCACTCCTGATTTATAAGGCCTCTGATGGAAAAGTTACTAGGACAGCATACAATTTGTATAA
AACACATTGCGGCCTTCCTGGTGTACCTTCCAGTCTCTCAGTTCCCTGGGTCCCATTAGATCCCAGCCTGTTATTACCATATCATATCCATCATGGAAGA
ATACCTTGTACTTTTCCACCGAAATCACTGGATACCACAACACAACAAAAGATTGGTGGAACGAGAATGCCTACACGCAGCCACAGGAATCCAGTTTCCA
TGGAAACCAAAAGCAGTTGCTTGCCTGCTCAGCAAGTTGAAACTGAAGGAGTGGCTCCACATAAAAGAAAAATAACTTGAGGACTGTACCATGGAAAACT
AAATTTAAAAAAACAGTTATAACAGTGTTTAATTTAGATAAGTTTGAGGGAAAATAATCAGTAGGCAAGAGGAACATTTTTCCTGTAGTAGCTAGAGTGC
CTTGAAAAAATGTGTTGGCTATGTGAAGGAATATTTCAACTAAAATGGAATGGTATGCTTTTCACCCTTGAAGTTTGAGGAGGATCTTGATATGTTTTAA
CATTATCATGGCAGGGAAATATATAAAGAAGAAAAATATTTTTACATTAAACCTTTTCTAAAAATTGTAAATAGAAAAATAATTTGGTTTTTTATCAAGA
ACAACACTTATCGTTATGTATTGTGTTAGTTATATTGCCAGTCTGTTGCGACTGACTCAAAAAGTTAAATGTTGCCACTGCTGAAGATGATTATGAGCAT
CGCAAACTTTGTTTCTGACCCATTTTGACAGTTTTTATATACTCCTTTAAAATGATGAATGTTACAGGTTAATAAAGTTAATACCTTTAAAAACTTGGTG
AAATTCCATTACAGAAGCCAAAAATAAAAACTCCCTGCCTCTGAAAAGTCAGATTACTGACTTCTTGTTTGGCAACCATCAGTTTGTTTAATAAAAGAAA
AAATTTGGTGGTATAACATGTTTGATGACAGATGCCTCTATCTCTAGATTCAAGCTGAGTGTTGAAATACACTGCTGAAAGCAAAGAGATAGGTATGTTT
TCCAGAAAAAAAGTCAGTGTCATTGCTCCAGATGACAAGGTTAATGTGGTAAAGCATAAGCTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCC
AGGCTGGAGTGCAGTGGCATGATCTCAGCTCACCACAACATCCACCTCCTGGATTAAAGCGATTCTCCTGCCTCATCCTCCCGAGTAGCTGGGACTACAG
GCACCTACCACCAGGCTTGGCTAATTTTTTTTTGTATTTTTAGTAGAGACAGGGTGTTACCATGTTGGCCGGGCTGGTCTCAAACTCCTGACCTTGTGAT
CCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGGGTAAGCCACCGTGCCTGGCCAGCATAAGCTATTTTTATCCTCATCTATACTGATTGATTTA
AATTTTCCGGGCCTGCAGATGAATTTGGAAAAGGGCATAATCAACTGATGTTGCTGTAGCAAATTTGGACTTAAGAAACTACAGACAGGGCCGGGCGTGG
TGGCTCACACCTGTAATTCCAGCACTTCGCAAGGCCGAGGCGGGAGAATCACTTGAGTCCAGGGGTTGGAGACCAGTCTGGGCAACACAGACCTCATCTC
TACAAATAAAAAAGTTAGCCGGGTGTGGTGGGGTGTGCCTGTAGTCCCAGCTACTCAAAAGGCTGAGGCAGAAGAATTGCTTGAGCCCAAGAAGTCAAGG
CTACAGTGAGTTGTGATCGCACCACAGAACTCAGCTTGAGTATCAGAGTGTGACCCTGTCTCAAAGAAAAAAAAAAACAGGACAGGCTTGTTTAATCTTT
AGAACCCTTACACTAAAATTTTCAGAAATTATGTATGTCATTTGTAAAATATAAGTTTTGTAATCCTAGATAATTGCTTCACATTGAAATTTTTTAGCTA
TTCTGTGTAAAGAATAGCTATTCTTTTGGCCTAATTTCTGAGAAATTAGACCGAAAAATCTCCTCAAGTATTGTAACAGTTGAAAATACTTATATTCAAC
TACCAAGTTTTGTTTCATTTTGATTTTTTGTTATAAAACATTTTTAAGTTATTTGAGAAGTAATTATTAGTAAAATTGTATCTTGATAAATCATTTCCTC
ATCCTGCCATTCCCTTTTATAAAACACTGAGTTTTTTTATTCCTTAAGTCACATATCCCAGAAATGTTTTGGTTGTGAATCATTTGCCAGCGAGCCAAGG
GAGAGGCAGGGATTCCCTTGAAATGTACTCTTACACTTTTTTATTTTATTTTTAATGTACATTTGTGTGCACCAGAATGGAATGTGCTCTTTTTAAAGAG
CTGGACAGTGGTTGCTTCAGACTTCTGAATACCAGAAAGACTTGCCTTTTAATTTTTAAATATTACTTTTTACATCATAAAATGTGTTATCTTATCCATG
TATTTGAATAACATCATATATAAAGGTAGTTTTTTGCT

Expression



Full and truncated open reading frames discovered in TCONS_00239255

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.