Detailed information on ENST00000558598

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375140 coiled-coil domain containing 153 retained intron ENST00000558598 516 268 noncoding Trans
ENST00000415318 coiled-coil domain containing 153 protein coding ENST00000558598 516 268 UTR5 Trans
ENST00000517408 antisense antisense ENST00000558598 510 283 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000558598 538 281 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000558598 605 277 UTR5 Trans

Sequence

>TCONS_00186316 (3935 nt)
TTCTAGTATCACACATTATATATTTCCTCATGTAGAATCATTAGTCTACCAAAAGATGGCAGTTTTGTTCCTCACAAGTTTCTGTTGTAATCTAAAAATA
AATGATTATGGTAGCTTTTTTATTACTGTACCTAACACTTTTTACCCTCTACTAGAATACAAAGTTTTTATATACAAGAAAAAAAAAGAGTGTTGAAGTT
TTATGAAACTGACCATCTTTTTTGTTATTTTTTTAGGAATTTGCCATTTGTAAAAAACAGTCTTTCTGTTTTTGGCTTCTTCGATTTAATGTGAGCTATT
CTTATTTTGTGTTCTTCAAATGGCCGTGAAATGTGAACCAGAAAAAGCTACCCCCTTCACTTTTTTTTTTTTTAAAGAAATCTCAGCTTGTTGAAAGAGA
TCCTTTCTTTCCATAGGCAAATTTGGCCAAATTTAGCTCTTCTCCTGAAACATGGACCTTTTTGCTCCAAAGTGAAGGGTTCTTTCATAAGGAAATCAAA
GCACTTGGTATTTTGAATAATGGTTTATTCAAAAAGAACTTGATTGACTCAGCAAAGTACCTCAAATTCTTGTTTGTCTGCTTTTACCATGTTAAACCTG
AACATAAAATGCAAATTATTTGGTCTAGTTATTTAAAATTTTGAAACATTAAGTTAAAAGCTATTTGGAAACAAGTTATTATTTTTTCTTTTCTGTCATG
ATTGGGTGAATATAACTGGCTTGTAGAGTCTGATGTTAATAAAACAAATTCTTTGGGGAAAGAGGTGAGCCTCTCCGCTGTAAATCAGTAATTGTAAAAG
AACTAGTGTTTAGGTAAATGACTGCTACCTGACCTCTATTATTCTAGAAGACTGAAGAGGGTATTTTTATTCAGTAGTGAAACACTTAAAAGCTTCTAAA
ATATTTGAAATTGTGCTTTAAAAAAATGCACAGTTTAATACATATCAGTTTATAGGAAGGAAAGCTATTCCCAGAAATTCTCAAAACAGAAATTATGCAG
GATTAGCAGTATAGCATTATTGGCTCCCAAGGCTCTTGGTTACAGAATTACCATTGAAAATTTTATCAAAAGCAGCCTTGTCCCTGATAGCTGCCGAATC
ATTTTTAAAAAGGGGGGTGGATGGGAAGATGGGAGAGAAAGTAGAAAAGGATATGTGTTTATTAAACCTTAACATGGGATCCATTTAAACTTTTGATGTT
ATTTATATCTGAATATACAGAATTAACACTATAAAGAGCCTGCTAAGACTAGACTTCCAGGCTGAGCACGGTGACTCATGCCTGTAGTCCCAGCATTTTG
GGAGGCTGAGGCAGGTGGATAGCCTGAGCTCAGGAGTTTGAGACCAGCCTGGGCAACATAGTGAAACCCCATCTCTATCAAAAATACAAAAAATTAGCTG
GGTGTGGTGGCACATGCCTGTGGTCCCCACTACTTGGGAGGCTGGGGTGGGAGGATCACTTGAACCTGGGCGGTGGAGGTTTCAGTAAGCCGAGATTGCA
CCACTGTACTCCAACCTGGATGACGGAGTGAGACCTCATCTCCCCACCCCCCAAAAAAGAAAAGATTTCCAAATATTAGGTACATATACTAATATTATGA
GATTCTCAACATAAGAAGACTGTTTTTCTGAAACAATAATGTATTTTTGAAAAGTCACTTAGAGGACCAGAAACATTTTTTAAAAGCCCTACCAAGATTT
AATACATGGTATAAAGTTATTGATTTTTGGGCATTCAAAAAAGTATTGAGATTAATTATTAAAGTAGACAGTATAGTACTGTAGAAAGAATAGGGAGGAT
CCAAGTTCAGTAGTTTTGTTTGTTTTTTGAGTCAGGGTCTTGCTATGGTGTGAAGGCTGGCCTTGAACTTCTGGGCTCATGCAGTCTTCCCAAGTTGCTG
GAACTACAGGCGTGCGCCACTATGCCATGCTCAGTATTTTTTAGCTGTATTTCTGACTTTTATCAAATCATTCAATCTGCTTTTCTATCAATAATAGTAT
ATAACACTAAATACTTAAGGTTTATTAATGGTGTGGTAGGGATTCTCATCCCAATTGCTTATTAGAGATTTTTATCCCAGTTTGATAGATGAGGAAACCA
GAGAGGTTAAGCAGTTTGCGCTGACACCACAGCTAGTAAGTGGCATTGCTGGAATTCAGGTCTGGGTCTATATGACTCTAGAGCTTGTGAGTCTATCCTG
CCCCTAATACATGTATTTGTGTAGCTTACCTTCAAAGGGACGATGTGAAGATAAATGAGATAACGGATGGGAATGTACTTTAAATTTCACATAGTTTGTA
TTTTTCAAAGTATTTAAAATGATGTGGTATACTAATGAGAAATTTTAATTTTCAAAGCTTCACTTAAAGGACAAGAAGCGATTTGAAAAAGCTAACCAGG
ATTCAGGTCCCGGTTTGAGTCTTGAAGAATTTATTGCTTTTGAGCATCCTGAAGAAGTTGATTATATGACGGAATTTGTCATTCAAGAAGCTTTAGAAGA
ACATGACAAAAATGGTGATGGATTTGTTAGTTTGGAAGAATTTCTTGGTGATTACAGGTGGGATCCAAGTAAGTCACCTGGGAGAATGTGAAAAGAGAAA
AGGAATTGAAGAAAGACATTGAAAGACAGCCTTGCTCATTGAAAGCTCTCTTCAACAGGAAATGTAATGAGGATCTGTGTCTGATCCTACTTGTTTCGTT
AACTGTAATACAAGTTCAACAAATGGATTTATAGCTTATCTGAGAACGCTGTCTTGCTTACTTTTACTTCCGTGTCTAGAGTCAAACATTTTTCTTTCTT
TTCAAACAAATCTAATTTTATTATCAGTTTAAATGGGGAAGGAAGTAAGGTAGATATTTTTAAACAAAATCCTGTGCTGTTGCAGGTGGATCTTAAAAGA
GATAGAAACATAAAACACTACAAATACTGGTGTAAACACAGTATCAGAAGCTTAGTAGAAGGTGAATAAGTGTTTGAAATTAAGAGTTTGCTTTTATATA
AGCAGCTGTTTTTTCAGAATTGTTGCTTAAAGACACCAAACAATGCCATTTTTAAATTGGTCACCAGTTTTACTTATTCTGATTGTCACTTTAAAATTAC
ACATGGCATTACTTTGTGAAAACATGTAAGAAACTTTGTATAGAAACATGATATACAGTAAAACATTACCCACCTCACATCTGGGAAAACTAGATATCGG
AACAAATAGCAGTTAACAAAATTACTAGTTTGTGAAAACATCCAATGATTTTAAAACTGGGTTGTTTAGACTCGTGTCACTTTTGAAAATGACTATATAT
TTGTTCTTATGTCAGGACTTTTCAGTTAAGTAGTTCTGTTTTATTGGGCTTTCTTTAGTAAACTTTAAATTCACTTCCTTTATTCTAGGGATATACCAAA
CTTCTTATTGGATACATGTGATATTCTTGTGTATGTATATTTGTGTTTTTTTATATTAAGCTGCAAATGAAGATCCAGAATGGATACTTGTTGAGAAAGA
CAGATTCGTGAATGATTATGACAAAGATAACGATGGCAGGCTTGATCCCCAAGAGCTGTTACCTTGGGTAGTACCTAATAATCAGGGCATTGCACAAGAG
GAGGTAAGTGTTACAGAACAACTGTTTCTCTCCACCCCCTCCCCCCGAATTTGGTGCTGTTGATAGGAAAAGAAGTTCAAAATCTTAAGCCAAAGAAAGA
AGTAATGGAGTTATTTGGGATTGATGCATTACTATGTTTTGAATTTACGAACTGTTTAGATTGTCAGGGAGACGAGGAAGTTAAGATTGTGTCATGTATT
AATTTGAGAGTACAGTGAATAGAATAATAGTTTGTATTTACCTACAGGGACTCAAAACAGGTTATAATAATTTTTCATTGCCTTGATATATCCTGGATTG
GATTTGAGTGGAGAGAGACAGAACCCAGCAGAAATG

Expression



Full and truncated open reading frames discovered in TCONS_00186316

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.