| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000397755 | zinc finger family member 788 | processed transcript | ENST00000560085 | 511 | 293 | noncoding | Trans | |
| ENST00000593250 | centrosomal protein 76kDa | nonsense mediated decay | ENST00000560085 | 571 | 285 | UTR3 | Trans | |
| TCONS_00030130 | calcium/calmodulin-dependent protein kin... | novel protein coding | ENST00000560085 | 638 | 284 | UTR3 | Trans | |
| TCONS_00119512 | zinc finger and BTB domain containing 7C | novel protein coding | ENST00000560085 | 626 | 278 | UTR3 | Trans | |
| TCONS_00135884 | zinc finger protein 347 | novel protein coding | ENST00000560085 | 534 | 288 | UTR5 | Trans | |
| TCONS_00168219 | THO complex 5 | novel protein coding | ENST00000560085 | 563 | 272 | UTR3 | Trans | |
| TCONS_00168220 | THO complex 5 | novel protein coding | ENST00000560085 | 563 | 272 | UTR3 | Trans | |
| TCONS_00173729 | cms1 ribosomal small subunit homolog (ye... | novel protein coding | ENST00000560085 | 608 | 283 | UTR5 | Trans | |
| TCONS_00186316 | KIAA0232 | novel protein coding | ENST00000560085 | 604 | 303 | UTR3 | Trans | |
| TCONS_00205414 | prolyl 4-hydroxylase, alpha polypeptide ... | novel protein coding | ENST00000560085 | 606 | 291 | UTR3 | Trans | |
| TCONS_00246881 | cyclin-dependent kinase inhibitor 2A | novel protein coding | ENST00000560085 | 611 | 298 | UTR5 | Trans |
>ENST00000560085 (1025 nt)
ACCGTAGATAAAGTACTTTCTCTCTGCAGGTACTACCCCAGTGGAGATGCCTTTGCTTCAGGGTCAGATGACGCTACGTGTCGCCTCTATGACCTGCGGG<br />CAGATAGGGAGGTTGCCATCTATTCCAAAGAAAGCATCATATTTGGAGCATCCAGCGTGGACTTCTCCCTCAGTGGTAAGATTTTATTTCAGAAACTTTT<br />CCCAGGACTGTAAGACAGGACCAGAATGAAACTAGCGCTCCATCATCGCTCAGTTCCTTTTCATCAACTGAGCTTCCTGTGGACCAGTATGCGAAATCAT<br />CCATATTTGCACCAGTTTTCCTCCTCTGAGCTTCTGACCTCCCACTTTGTCCTGCCCCAGGCAACTTCACTCCAGGGGGAAATGAAGGCTGTGTACCCAC<br />CTAATGCTGTCCTTCAAGGCAATGAAGTGTCAGAAATTCACTTCCACAATGCTCTCAGGCATTTTCTCCCCAGCCTTTGCTTCTCTTCATGCCCCAAAGG<br />GAACTTTTCTGTAAGGTGGAGGTGAAGCAAGAGTCCCTTCTTGGTGGGATACTGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACAGGCG<br />ATCACTTGAGGTCAGGAGTTCAAAACCAGCCTGGCCAACATGGTGAAACCTTGTCTCTAATAAAAATACAAAAATTGGTTGGGCATGGTGGCGCATGCCT<br />GTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGAAAATGGAGCTTGCAGTGAGCTGAGATCGTGCCACTGCACTCCACCCTGG<br />GCAACAGAGCGAGACTCTGACTCAAAGGGAAAAAAAAAATGAGTCCCTTCTCAGTGCCTTGAAGCTCATGGCTCCTTTGTGGGAAGCTGCTGGTGAAAAA<br />GCATAGCTCCAGAAGGATCATGTCAAAAAAAGAAAGAAAAATAGAAAGTTAAAGCAGAGGTTGCAGTGAGCCAAGATCATCCCACTGCACTCCAGGCTGG<br />GCAACAGAGCAAGACTCTGTCTCAA
In silico ORF/peptide predictions
>peptide 1 (99 aa)
MKLALHHRSVPFHQLSFLWTSMRNHPYLHQFSSSELLTSHFVLPQATSLQGEMKAVYPPNAVLQGNEVSEIHFHNALRHFLPSLCFSSCPKGNFSVRWR
>peptide 2 (71 aa)
MPQRELFCKVEVKQESLLGGILWLTPVIPALWEAETGDHLRSGVQNQPGQHGETLSLIKIQKLVGHGGACL
>peptide 3 (70 aa)
TVDKVLSLCRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGKILFQKLFPGL
>peptide 4 (60 aa)
MPLLQGQMTLRVASMTCGQIGRLPSIPKKASYLEHPAWTSPSVVRFYFRNFSQDCKTGPE
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.