Detailed information on ENST00000560386

lncRNA-RNA interactions

Number of interactions: 87

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000560386 650 302 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000560386 559 250 UTR3 Trans
ENST00000320892 ring finger protein 144A protein coding ENST00000560386 608 297 UTR3 Trans
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000560386 663 296 UTR3 Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000560386 551 307 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000560386 643 303 CDS Trans
ENST00000498535 makorin ring finger protein 1 nonsense mediated decay ENST00000560386 556 288 CDS Trans
ENST00000507518 hydroxysteroid (17-beta) dehydrogenase 11 processed transcript ENST00000560386 552 222 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000560386 548 264 CDS_UTR Trans
ENST00000561387 ubiquitin associated protein 1-like retained intron ENST00000560386 621 290 noncoding Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000560386 594 267 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000560386 700 297 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000560386 563 261 UTR3 Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding ENST00000560386 609 263 UTR3 Trans
TCONS_00025758 zinc finger, MIZ-type containing 1 novel protein coding ENST00000560386 605 317 UTR5 Trans
TCONS_00025760 zinc finger, MIZ-type containing 1 novel protein coding ENST00000560386 605 317 UTR5 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding ENST00000560386 605 317 UTR5 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000560386 709 299 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000560386 651 311 UTR3 Trans
TCONS_00046540 sestrin 3 novel protein coding ENST00000560386 539 284 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000560386 644 265 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000560386 548 294 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000560386 611 296 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000560386 611 296 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000560386 611 296 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000560386 645 300 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000560386 645 300 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000560386 614 300 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000560386 700 297 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000560386 617 265 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000560386 659 296 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000560386 617 265 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000560386 659 296 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000560386 690 291 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000560386 532 260 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000560386 611 266 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000560386 649 290 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000560386 601 283 UTR3 Trans
TCONS_00136911 ring finger protein 144A novel protein coding ENST00000560386 608 297 UTR3 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding ENST00000560386 680 291 UTR5 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000560386 610 299 UTR3 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding ENST00000560386 608 297 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000560386 623 260 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000560386 674 297 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000560386 674 297 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000560386 674 297 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000560386 623 260 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000560386 620 298 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000560386 620 298 UTR5 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000560386 604 311 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000560386 604 311 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding ENST00000560386 614 291 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000560386 650 302 UTR3 Trans
TCONS_00161498 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000560386 610 260 UTR3 Trans
TCONS_00163084 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000560386 621 298 UTR5 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000560386 608 303 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000560386 590 272 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000560386 608 303 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000560386 590 272 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000560386 681 295 noncoding Trans
TCONS_00175246 interleukin 20 receptor beta novel protein coding ENST00000560386 628 298 UTR5 Trans
TCONS_00180671 transketolase novel protein coding ENST00000560386 606 262 UTR5 Trans
TCONS_00180672 transketolase novel protein coding ENST00000560386 606 262 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000560386 640 289 UTR5 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000560386 605 262 UTR3 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000560386 605 262 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000560386 606 301 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000560386 624 291 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000560386 646 290 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000560386 605 296 UTR5 Trans
TCONS_00199451 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 novel protein coding ENST00000560386 611 260 UTR3 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding ENST00000560386 652 307 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding ENST00000560386 652 307 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000560386 630 290 UTR5 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding ENST00000560386 645 291 UTR3 Trans
TCONS_00224726 caldesmon 1 novel protein coding ENST00000560386 543 297 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding ENST00000560386 543 297 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding ENST00000560386 684 295 UTR3 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding ENST00000560386 612 305 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000560386 608 267 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000560386 608 309 UTR5 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000560386 663 295 CDS_UTR Trans
TCONS_00244728 chromosome 9 open reading frame 91 novel protein coding ENST00000560386 606 288 UTR5 Trans
TCONS_00246554 endoplasmic reticulum metallopeptidase 1 novel protein coding ENST00000560386 619 290 UTR3 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000560386 607 285 UTR5 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000560386 663 296 UTR3 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding ENST00000560386 607 290 UTR3 Trans

Sequence

>TCONS_00251973 (3437 nt)
AGCCTTATCTCATAGAGCTTTCTAAGAAGTATGGAGTACATGTTTGTGGAGAAGGTGGAGAGTATGAAACTTTCACTTTGGATTGCCCTCTATTTAAGAA
GAAAATAATTGTGGATTCATCAGAAGTAGTCATACATTCAGCTGATGCATTTGCACCTGTGGCTTATCTACGCTTTTTAGAATTGCACTTGGAGGACAAG
TGTGATGCCTACCAACATGTTATGATGCAGCAAGAAGGCTCTCACCAGATGGTGGCATCTTTATAGTGGACTTTTCAGCCTCCAGAACTGTGAGTTCATT
CATGAGGGTGGAGTCATCATGGTCTAATTAATTATTACAGATCCTACTATGAGCCAATTCATTTCTGTTCTTAATAAATTACTCAGTCTGTAGTATTCTG
TTACAGCAGCATAAAACAGGCTAAGACACTCATCAGTTGTAACAAATCTACTACACTAATCCAAAATATTAATAGAGGAAACTGTGGGGAGAGGTTGGGA
GGTGATGTGGGACCTCTTGGTATTTCCCACTCAACTTTTCTGTAAACGTAAAACTGCCCTCCCAAAATAGTCTATTTTTAAAAAATAAAAGTAGTCAAAA
ATCTAAAAGAAAAAAATTATAGTAGACAGAGATATATGATATCACAAGTATAGTAAAATGTTAATAGTGGTAGTGTATGTGGATGTTCCTTATTATACTC
TGCTTTGTGTTTGACATTTTTCATAATAAATGTGTAACAAAGTCATTGTGGGTAATATTAAAAGAAAGCTTAGCATAGTAAGGTTCAGTTGAACCTGTGG
GACTTAATTCTAATTCCATTATGGATTTCTCATATGATTCTACTAAAAAATGTAACTTGATTTAACTACTTGAATTACTTATCTAAATTATGAAACCCAG
TTGGCCCTGTCTTCAGAAACTAGAATCCAGATAAAATTACCTATTGTTTGTGATGTTAACATGTATTATCCCATCAGCAGAAGAATCTGAGCAGTGCATT
GTAGTTTTTTTAAACAATATTGATGATATGGTAGTAGAAACTGAACAGCTACTCCCTGGACTTTGTCAATGTACTTGTTATGACTTAGCACTGTTTTATT
TACCATCCAAAAACATATTTTTTATTACTCACTGCAACATGACAATAATTCCAGTTTTGAGTGGTGTATATTTCTCATTATGAATCTAAATACACAGAAC
GTTTGCTCTGTTTTCAGTCACTAGGCTGCGTGAAAATGGTGTATTAAAAATAGTCTGACATATTTGCATATTTATCTGTATTAAAAGCGTCATGAAACAG
TTATTGCAGATACACAGCTGTTGCTTTTCAACTATTTTTTAAAGGAACCATATCTGCTCTCCTATATAAAATACATACATTTTCAAAAGTATCGTCTGAG
CCAAATGAATTTCAAAGCCTTAAAGAGGAAAGCTTATCTCAGAGAATTATAAATTTTTAGTCACTGTGTCTAAATGATAAATTTTTAACCTAAAATGATA
AACTTGTTCCTTTGCCAAGTCAGATATTATGCATTGTAAACAGAAAGTAATTCTGGAAGCTCCTACAAATTATGGCTGCATTTCAGCATAGAGGCTGTTT
ACCTACTCTACAGAGCACATAAAAGGATGCTGCTTTATATCAACCACATTACGGAAGAGAAGACTACACTTTGTGACTTAAAATGACAGTTGCTCTTGTA
ATGTAAAGAAATTTTTATTTTAAGAGCATTTTTAAAATATCTTCATGAAAGACAATAGTATCATCTTTCTTTTCAATTAAAAAGAAAACTGTATGCCTCT
GGAATCCTAGCTACTATCATCTTAGTAGTTGCCAGAAAAGGACCCTGATTTAAAAACAATTCTAGTGACTTTCATTATTTTTTAAGGATTTCAATATGGA
CTCTCTTGGTGTAAGAAAACATACATTTTTTTTCAATTCTGTGATCATATCAGGTTCAGTTGATTGTCATATAATTCAAATAAACACCAGACGTTCTCAT
TTTAGTATCTTAATTACACTGCTTGTTTTGTTTTAATTAAAAAAAAAAGCTTTAAGCATAGTTGAACAAAAGATCTCACGTTTCATAATTCAGTTTCACC
ATGTTAGCTAAATAAGAGAGTCCAAAGAAGAGAGGATTATCATATGTTAAATAAAAAGTTGGCCACTTTGTAGCATTAATCCTATTAGAAAAAGATAATT
TCTGTCTAACTTAATCAGTAAGAAGTCTTTATTGCCCTGAGTATTAATTGATTAGGTTCTCATTAAGGTCAAAAGTACACTTGACTGACCACAGGCAGCC
AATTAGCAAATTGTCAGCCATGCTTACTTATATTGACTGAACATAATGGTAGTTATTTGACTGTCAAGTCAGAAGGTCACTGAATCTTTTGTGCACTTTG
CCCTCTGAAAGGGCAACAGTCATTCAGACCCCAGAATGCATTCATAACAAAGATTTAGCTTATTACTTATTGACTTAAATCACCCTTAGAAAAAGGTGTT
TCGTTCTCTTTGAACAAATACTATGTTATTTCTTTGTAAAATACTTGAAGTTTGGTTGAAATCCTGTGGTTGATTGTGTCTGAGGATTTTTGTTCAGCAA
GCAGCTTGCACTTGAAACTCTAAATAGCTTTTTAAAGAGCAGATCGATCCAATGACTACAGTTGGCCCTCTGTATCTGTGGGTTCTGCATCTGTGGATTC
AACCGAGGACTGAAAATATTTGAAAAAAAATGTTGTGTCTGTACCAAGCACGTACAGACTTTATTCTTGTGATTACTCAGTAAAAAAAATACAGTATAAC
AACTATTTACATAGCATTTACTTTGCATTAAGTATTATAAGTCATCGAGAGATGACTTAAAACATACAGGGAGGATGTGTGTATGCCATTTTATATCAGG
GACATGAGCATTCTCAGATTTTGGTATTCAAGAGAGACTCTGGAACCATTCCCCCACTGACACCAAGAAAGAACTGTATATCCCTTTGCAATATAAACTT
TTCTCCTGCTATGTGGCTTTGCTCTAATTGTAGAAAGTTGGGCACACAGTTGCTGAAATGGCTCTGGGACACCAGTCTCAAAGTTAACGGTTAGAACCAT
ATTTGAGGCTCACATTAATAAGGACATTGGTGGCCGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCGCCTGAG
GTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCAGGTGTCTGTAATCCCAG
CTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAATGAGCCGAGATCCGCCATTGCACTCCAGCCTGGGCAACAAGAGC
AAAACTCCGTCTCAAAAAAATAAAAAATAAATAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.