Detailed information on ENST00000560927

lncRNA-RNA interactions

Number of interactions: 29

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000336824 fibronectin type III domain containing 3B protein coding ENST00000560927 538 297 UTR3 Trans
ENST00000423516 transketolase protein coding ENST00000560927 516 300 CDS Trans
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript ENST00000560927 546 298 noncoding Trans
ENST00000472528 transketolase nonsense mediated decay ENST00000560927 516 300 UTR3 Trans
ENST00000475187 THO complex 5 retained intron ENST00000560927 534 308 noncoding Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000560927 616 315 CDS_UTR Trans
ENST00000569455 cadherin 13 processed transcript ENST00000560927 537 305 noncoding Trans
ENST00000606818 antisense antisense ENST00000560927 555 267 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000560927 525 301 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000560927 601 302 UTR5 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000560927 622 293 UTR3 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding ENST00000560927 610 294 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000560927 543 298 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000560927 644 300 UTR5 Trans
TCONS_00180672 transketolase novel protein coding ENST00000560927 516 300 UTR5 Trans
TCONS_00180673 transketolase novel protein coding ENST00000560927 516 300 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000560927 620 292 UTR3 Trans
TCONS_00184374 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000560927 620 292 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000560927 529 293 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000560927 566 306 UTR3 Trans
TCONS_00212185 TEC novel protein coding ENST00000560927 543 300 UTR3 Trans
TCONS_00222612 carnitine O-octanoyltransferase novel protein coding ENST00000560927 503 300 UTR3 Trans
TCONS_00222619 carnitine O-octanoyltransferase novel protein coding ENST00000560927 503 300 UTR3 Trans
TCONS_00222623 carnitine O-octanoyltransferase novel protein coding ENST00000560927 503 300 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000560927 604 298 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000560927 619 304 UTR3 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding ENST00000560927 600 298 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding ENST00000560927 600 298 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000560927 627 301 UTR5 Trans

Sequence

>TCONS_00252827 (2462 nt)
TATGATCACAGCTATGCAGTTCTTACCATAAATGTAAACGGAGGCTGGAAAAGAGCATGAAGAAGGGAAAACAGCTAATGTGTTAGGGTTGTGGATAGTA
GCTTAGTTTTTCTTTCAGAAATTCTTTTATTGTTGTTAAAGATTATGCCAGTGTATCCAAACATACACACTCAAAGACCTTGCAAGAGGACGTTACTATC
ATGGTATATGGGACATTTGGAACATGGGTAAGCTCTTTCCGAAAATAGAGTAATCAAAACCCAGAAAGCACCGGAAACCTTGAGGGTGTGATCACTTACG
TCGAGAAGAAATTGAAACAAGACTTTCATTCTTGAACCGTTCCCCTACAAAATACTATACTTTGATGCTTCTTTAGATCTTTGCTGTTACCTCTCAGCGT
TCTTAAATCACTTTGTTTCCAGGTTCAATTTCAGAAGCTTCAGCAACTGCGCCTTACACAGTACCATGGAGGATCCTTACCAAATGTGAGCCAGCTGCGG
AGCAGTGCGTCAGAGTTTCAGCCGTCATTTCACCAAGCTGATAATGTTCGGGGAACCCGCCATCACGGGCTGGTGGAGAGGCCATCCAGGAACCGCTTCC
ACCCCCTCCACCGAAGGTCTGGGGACAAGCCAGGGCGACAAATATCCTTTTTTACTCTTCAAAGGGAGTGTGCATTCTGAAATGTTTGAAAAGTTTTCAG
GATTTATCTTCCCTGCAATTCTCCTTTGGCCTCAGAATCTTCATTTATCTGATGAAAGGAGGCAATACAAATAAATGAGTTGGAAACTAGAAACATCTCT
GCAGTCAACATTTGGAAACATCATTGTAGGTGTTTATGAAAGCATCAATAAAGTTCAGTTTAATGAAATAACAACAAAAACAACCTGTAATTCGGTCCCA
TTGCAGGGTGTTCTGAGCATTTTCTCCAGAAATTGGCCACGTTAGAGTTAAACCTGACTTTGAATCAGGTTAGAGAGCCTTAGTCTCTTTAGCAAAAATG
GACATAGAGATATGTGATTTATTTGTACTTCTTTTGATCTGCTGACCTGCTTTTGGAACTTACAGACAAAATTTCATATTATTTTCTATTTGTGATGTTT
CAAACTCAGTAAGTGATAACTAAAATAAACCTAGAATATAGGAAAATCTCATGCAGTGATGTACAGTCACACCAAACTCTGCTGTTAAGTAGAAATAAAG
GAAAGGAAATGGTGAATTCACCTGACAGTTTCATTTAATCAGTCCTGTTTACAGGGCGGCAGTGGTGGGTGCAGCTGTGTGACCAGCATTGTGCCGAAGG
CTTTGGGGAACAGAACTGAGCTGGATTTTTTGGGAGAGGACACAGAAGTGTGCCAGGAGGGCCCGTGCTCTCACTTCATTCTTCTCAGTACTCGGGCGCA
GGGGTGGAGGAAGGAGAAGAAAGGCGGGGTGGGTCTCGCTGCGGAGAGCTGAATTCCTGGCAGTGATGGTAGAGTTGGCTTCACAAGCCTAGAAACCAGG
AAGTGGGGGCAGGGCACTCATGTTTACTGAGCACCTACCCATGCCAGGCGCTGTGCTGGGTAATTTATGTGTCACTTAGTCCTCAAAAACTCACTGAGTC
GTTAATTTTTTTAACCCTCATTTTCTGATGAGGAAACTGAGTGTGTGGTGAAGTAACCCAGGATTCAGACCAGGCCCCGCTGATGGCCCAGCCTGTGCTC
TCCCCTCCCTATGCCACCTGCGACCATTCGCAGTGATGAGGACCTTGTACAAGGGAGCCAGGAGTTGTGGGGGCACTCTAGGGAAACCCCAACTTTTCTT
GCCTTCAAGCTTCTTGCAGTTTTTAGTCTATTTGGAGGCAAGGATAATGACCCCAGGGAATGTTTTTCTCTCCCCTTTCTCCCGCCCCCAGGAACACACC
ACATTTGGTCCACAGAAGGACTGACTTCTGATTTTGTATATTATGTGGCTGTTATCAAGGAAAGTAAAGATGATAAATGATCTTGAGAATCTATTCTGGA
ATGTGTGATAACTTTGACATTGAATGAAAAAGGCAAAAGGAAATGGAGGCAATTCATCAGCAAATTTGTACATGTCAGGATGGAGTGGTACATCAAACCG
TTGTCCAAATTGCCAAGAATATTCAGGCAAAAGACTTGGAGTGTTTCTTTGATTGATTTAACAATGTATTTTTTTTGGCTGGGCATGGTGGCTCACGCCT
GTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACGTGGTGAAACCCCGTCTCTACTAAAATT
ACAAAAAATTAGCCAGGCTCGGTGGTGGGCACCTATAGTCCCAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAGGTGGAGCTTGCGGTGAACCGAGAT
CGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.