Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000336824 | fibronectin type III domain containing 3B | protein coding | ENST00000560927 | 538 | 297 | UTR3 | Trans | |
ENST00000423516 | transketolase | protein coding | ENST00000560927 | 516 | 300 | CDS | Trans | |
ENST00000467462 | inter-alpha-trypsin inhibitor heavy chain family, member 4 | processed transcript | ENST00000560927 | 546 | 298 | noncoding | Trans | |
ENST00000472528 | transketolase | nonsense mediated decay | ENST00000560927 | 516 | 300 | UTR3 | Trans | |
ENST00000475187 | THO complex 5 | retained intron | ENST00000560927 | 534 | 308 | noncoding | Trans | |
ENST00000553936 | gephyrin | nonsense mediated decay | ENST00000560927 | 616 | 315 | CDS_UTR | Trans | |
ENST00000569455 | cadherin 13 | processed transcript | ENST00000560927 | 537 | 305 | noncoding | Trans | |
ENST00000606818 | antisense | antisense | ENST00000560927 | 555 | 267 | noncoding | Trans | |
ENST00000620139 | melanoregulin | protein coding | ENST00000560927 | 525 | 301 | UTR3 | Trans | |
TCONS_00001594 | lincRNA | novel protein coding | ENST00000560927 | 601 | 302 | UTR5 | Trans | |
TCONS_00034643 | CD82 molecule | novel protein coding | ENST00000560927 | 622 | 293 | UTR3 | Trans | |
TCONS_00082423 | transcribed_processed_pseudogene | novel protein coding | ENST00000560927 | 610 | 294 | UTR3 | Trans | |
TCONS_00109011 | trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) | novel protein coding | ENST00000560927 | 543 | 298 | UTR5 | Trans | |
TCONS_00124891 | zinc finger protein 540 | novel protein coding | ENST00000560927 | 644 | 300 | UTR5 | Trans | |
TCONS_00180672 | transketolase | novel protein coding | ENST00000560927 | 516 | 300 | UTR5 | Trans | |
TCONS_00180673 | transketolase | novel protein coding | ENST00000560927 | 516 | 300 | UTR5 | Trans | |
TCONS_00184373 | neutral cholesterol ester hydrolase 1 | novel protein coding | ENST00000560927 | 620 | 292 | UTR3 | Trans | |
TCONS_00184374 | neutral cholesterol ester hydrolase 1 | novel protein coding | ENST00000560927 | 620 | 292 | UTR3 | Trans | |
TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | ENST00000560927 | 529 | 293 | UTR3 | Trans | |
TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | ENST00000560927 | 566 | 306 | UTR3 | Trans | |
TCONS_00212185 | TEC | novel protein coding | ENST00000560927 | 543 | 300 | UTR3 | Trans | |
TCONS_00222612 | carnitine O-octanoyltransferase | novel protein coding | ENST00000560927 | 503 | 300 | UTR3 | Trans | |
TCONS_00222619 | carnitine O-octanoyltransferase | novel protein coding | ENST00000560927 | 503 | 300 | UTR3 | Trans | |
TCONS_00222623 | carnitine O-octanoyltransferase | novel protein coding | ENST00000560927 | 503 | 300 | UTR3 | Trans | |
TCONS_00237103 | cathepsin B | novel protein coding | ENST00000560927 | 604 | 298 | UTR5 | Trans | |
TCONS_00239255 | tumor protein D52 | novel protein coding | ENST00000560927 | 619 | 304 | UTR3 | Trans | |
TCONS_00240045 | zinc finger protein 706 | novel protein coding | ENST00000560927 | 600 | 298 | UTR3 | Trans | |
TCONS_00240046 | zinc finger protein 706 | novel protein coding | ENST00000560927 | 600 | 298 | UTR5 | Trans | |
TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000560927 | 627 | 301 | UTR5 | Trans |
>TCONS_00252827 (2462 nt)
TATGATCACAGCTATGCAGTTCTTACCATAAATGTAAACGGAGGCTGGAAAAGAGCATGAAGAAGGGAAAACAGCTAATGTGTTAGGGTTGTGGATAGTA
GCTTAGTTTTTCTTTCAGAAATTCTTTTATTGTTGTTAAAGATTATGCCAGTGTATCCAAACATACACACTCAAAGACCTTGCAAGAGGACGTTACTATC
ATGGTATATGGGACATTTGGAACATGGGTAAGCTCTTTCCGAAAATAGAGTAATCAAAACCCAGAAAGCACCGGAAACCTTGAGGGTGTGATCACTTACG
TCGAGAAGAAATTGAAACAAGACTTTCATTCTTGAACCGTTCCCCTACAAAATACTATACTTTGATGCTTCTTTAGATCTTTGCTGTTACCTCTCAGCGT
TCTTAAATCACTTTGTTTCCAGGTTCAATTTCAGAAGCTTCAGCAACTGCGCCTTACACAGTACCATGGAGGATCCTTACCAAATGTGAGCCAGCTGCGG
AGCAGTGCGTCAGAGTTTCAGCCGTCATTTCACCAAGCTGATAATGTTCGGGGAACCCGCCATCACGGGCTGGTGGAGAGGCCATCCAGGAACCGCTTCC
ACCCCCTCCACCGAAGGTCTGGGGACAAGCCAGGGCGACAAATATCCTTTTTTACTCTTCAAAGGGAGTGTGCATTCTGAAATGTTTGAAAAGTTTTCAG
GATTTATCTTCCCTGCAATTCTCCTTTGGCCTCAGAATCTTCATTTATCTGATGAAAGGAGGCAATACAAATAAATGAGTTGGAAACTAGAAACATCTCT
GCAGTCAACATTTGGAAACATCATTGTAGGTGTTTATGAAAGCATCAATAAAGTTCAGTTTAATGAAATAACAACAAAAACAACCTGTAATTCGGTCCCA
TTGCAGGGTGTTCTGAGCATTTTCTCCAGAAATTGGCCACGTTAGAGTTAAACCTGACTTTGAATCAGGTTAGAGAGCCTTAGTCTCTTTAGCAAAAATG
GACATAGAGATATGTGATTTATTTGTACTTCTTTTGATCTGCTGACCTGCTTTTGGAACTTACAGACAAAATTTCATATTATTTTCTATTTGTGATGTTT
CAAACTCAGTAAGTGATAACTAAAATAAACCTAGAATATAGGAAAATCTCATGCAGTGATGTACAGTCACACCAAACTCTGCTGTTAAGTAGAAATAAAG
GAAAGGAAATGGTGAATTCACCTGACAGTTTCATTTAATCAGTCCTGTTTACAGGGCGGCAGTGGTGGGTGCAGCTGTGTGACCAGCATTGTGCCGAAGG
CTTTGGGGAACAGAACTGAGCTGGATTTTTTGGGAGAGGACACAGAAGTGTGCCAGGAGGGCCCGTGCTCTCACTTCATTCTTCTCAGTACTCGGGCGCA
GGGGTGGAGGAAGGAGAAGAAAGGCGGGGTGGGTCTCGCTGCGGAGAGCTGAATTCCTGGCAGTGATGGTAGAGTTGGCTTCACAAGCCTAGAAACCAGG
AAGTGGGGGCAGGGCACTCATGTTTACTGAGCACCTACCCATGCCAGGCGCTGTGCTGGGTAATTTATGTGTCACTTAGTCCTCAAAAACTCACTGAGTC
GTTAATTTTTTTAACCCTCATTTTCTGATGAGGAAACTGAGTGTGTGGTGAAGTAACCCAGGATTCAGACCAGGCCCCGCTGATGGCCCAGCCTGTGCTC
TCCCCTCCCTATGCCACCTGCGACCATTCGCAGTGATGAGGACCTTGTACAAGGGAGCCAGGAGTTGTGGGGGCACTCTAGGGAAACCCCAACTTTTCTT
GCCTTCAAGCTTCTTGCAGTTTTTAGTCTATTTGGAGGCAAGGATAATGACCCCAGGGAATGTTTTTCTCTCCCCTTTCTCCCGCCCCCAGGAACACACC
ACATTTGGTCCACAGAAGGACTGACTTCTGATTTTGTATATTATGTGGCTGTTATCAAGGAAAGTAAAGATGATAAATGATCTTGAGAATCTATTCTGGA
ATGTGTGATAACTTTGACATTGAATGAAAAAGGCAAAAGGAAATGGAGGCAATTCATCAGCAAATTTGTACATGTCAGGATGGAGTGGTACATCAAACCG
TTGTCCAAATTGCCAAGAATATTCAGGCAAAAGACTTGGAGTGTTTCTTTGATTGATTTAACAATGTATTTTTTTTGGCTGGGCATGGTGGCTCACGCCT
GTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACGTGGTGAAACCCCGTCTCTACTAAAATT
ACAAAAAATTAGCCAGGCTCGGTGGTGGGCACCTATAGTCCCAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAGGTGGAGCTTGCGGTGAACCGAGAT
CGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.