Detailed information on ENST00000561137

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000561137 557 268 noncoding Trans
ENST00000569832 SSTR5 antisense RNA 1 lincRNA ENST00000561137 516 287 noncoding Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000561137 502 287 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000561137 507 248 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000561137 563 272 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000561137 610 286 UTR3 Trans

Sequence

>ENST00000561137 (2660 nt)
TTTTTCACACGCATACTCCCCCCACTCGTCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTGAGGTGGAATCTCGCTCTGTCACCCAGGCTA<br />GAGTGCAGTGTGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCATACCTCAACCTCCCGAGTAGCTGGGATTACAGGCACCTG<br />CCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGAACGGGGTTTCACCGTGTTGGCTGGGCTGGTCTCGAACTCCTGATCTCAAGTGATCTACCCAC<br />CTCAGCCTCCCAAAGTGTTGGGATTATAGGCATGAGCCACCATACTCAGCCTCGCCCTGCTCTTTATATACACAGAAATATACATGTATCTTTGTATTTG<br />TGTGTGTATGTGTGTGTATCTTAATTTTACGTCAAATCTGTCAGTCTTTTATAGTTTCTGTCTTGGTGTGACGCTAATAAAAGCCTTTTCCCTCAAGTTT<br />ATAAACACATTTGATCATGTTTTCTTTCAGTACTTCTGTGCTTTCGTTTTTTATATTTAAATATTTGATCCTTTTAGGCTTAATTTTAAAATAATAAACG<br />AGGCAGAGACCCAATTCCCCTAACTCAAATAACTGGTCGGTTGTCCCAAATGATCCAACTTTCCCCCACTGATTTGACAGGTTCCTTTCGTAATACATTG<br />CGTTCTCACATACACTTGTATCTAATTATTCTCTGTTTTGTTTCATTGACTTATCAGTCTACTGTTAACACCTGTATTGCATTCTTTTAACTATTATGTC<br />TTGTACATTTTAATTTATTTTATTTTATTTTTTAGAGACGGGGTCTTGCTGTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGCAATTCTCCCATC<br />TCAGCCTCCCAAAATGCTGGGATTACAGGCATAAGCCACCATGCCTGGCCCCTGTGCATTTTAATATGGGTGACAGCAGGGGTAGGGAAAGCAATCCCCC<br />TCACCCACAAGACATTAGTCTTTTTAGTCCTTTTTTCGGAATTTTCCTGGCTGTTCTCTTTCTTTTTATTTATTTATTTATTTTTGAGACAATCTCACTC<br />TGTCAGCCAGGCTAGAGTGCAGTGGCACAATCTCAGCTTACTGCAACCTCCGCCTCCTGGGCTCAAGAGATCCTCCTGCCTCAGGCTCCCGAGTAGCTGG<br />GACTATAGGCACGTACCACCACACCTGGCTAATTTTTGTATTTTTAGTACAGATGGGCTTTCACCACGTTGGCCAGGCTGGTCTCAAACTCCTGAGCTCA<br />AGTGATCTGCCCCCCTCGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACCGTGCCCAGCTTTTCTGGCTGTTCTCACGTTTATTCTTCTCATTGAG<br />CTTTAGATTATTTTATCAATTCCTCCAAAAGGTCTTATTGAGCTATAATCCAATTTGACTGAATCTATGGATTGATTTACATAGAAATGATGATTTACAT<br />GTCAGTTCTTAGCTTTGAAAGATTTTGTCTGTACTTATTGTCATGGTTTTATAGTTTTTCTATGTAGACACTATACATTTCTTAAGTTTTCTCCCCCTGA<br />ACAATTTTGTTTGTAATTGTTATTGTGACAGGGCTCTTGCGTTCCATTTCTTCTTCCAAAGATTGCTGTTTCTCATCTGTCAGTGGTTATTTTGACCAGT<br />TTTCCTCTCAGAATATGGCCTCAAGCCCCTAATTCCTCAGGTCGCTAACCCACCCTGTGTAGCCTTCCTAGTGGACAACAACCACCAGAAGGCAGGGGAA<br />GCCGCCAGAGGCTGTGGCACCCAGGCCAGCACTAACACGGTTCATTCCTTCTTCCCTTGCCCCACCTTCTAGAGGCCACTACTTTTGCTCAGTGTATGGG<br />GCACGGCTGATGGTACCAGCTGGCCAGGGGCTCATCGTGGTCATCTCCTCCCCAGGAAGCCTGCAGTATATGTTCAATGTCCCCTATGGTGTGGGCAAAG<br />CTGCGGTGAGGACCCAGTGGCATAGGAGCTGAGGAGTGTGACAAGCTGGCTGCTGACTGTGCCCACGAGCTGCGGCGCCATGGGGTCAGCTGTGTGTCTC<br />TGTGGCCGGGGATTGTGCAGACAGAACTGCTGAAGGAGCATATGGCAAAGGAGGAGGTCCTGCAGGATCCTGTGTTGAAGCAGATCCCAATATCCTGAGC<br />CTGAGTGGTAAGGTGCTGCCATCCTGTGACCTTGCTCGACGCTATGGCCTTCGGGATGTGGACGGCCGCCCCGTCCAAGACTATTTGTCTTTGAGCTCTG<br />TTCTCTCACACGTGTCCGGCCTGGGCTGGCTGGCCTCCTACCTGCCCTCCTTCCTCCGTGTGCCCAAGTGGATTATTGCCCTCTACACTAGCAAGTTCTA<br />ACCCTCCTGGTCTGACACTACGTCTCTGCTTGTCTTCTCATTTGGACTTGGTGGTTCGTCCTGTCTCAGTGAAACAGCAGCCTTTCTTGTTTACCCATAC<br />CCTTGATATGAAGAGAAGCCCTCTGCTGTGTGTCCGTGGTGAGTTCTGGGGTGCGCCTAGGTCCCTTCTTTGTGCCTTGGTTTTCCTTGTCCTTCTTTTT<br />ACTTTTTGCCTTAGTATTGAAAAATGCTCTTGGAGCTAATAAAAGTCTCATTTCTCTTTC

Expression



Full and truncated open reading frames discovered in ENST00000561137

In silico ORF/peptide predictions
>peptide 1 (96 aa)
FFTRILPPLVCCCCCCCCCCCCFEVESRSVTQARVQCAISAHCNLCLLGSSDSHTSTSRVAGITGTCHHAWLIFVFLVENGVSPCWLGWSRTPDLK

>peptide 2 (59 aa)
FSHAYSPHSSVVVVVVVVVVVVLRWNLALSPRLECSVQSQLTATSASWVQAILIPQPPE

>peptide 3 (58 aa)
MYLCICVCMCVYLNFTSNLSVFYSFCLGVTLIKAFSLKFINTFDHVFFQYFCAFVFYI


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT036041 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q96LJ7|DHRS1_HUMAN (Evalue: 2.0E-46)