Detailed information on ENST00000561137

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000561137 557 268 noncoding Trans
ENST00000569832 SSTR5 antisense RNA 1 lincRNA ENST00000561137 516 287 noncoding Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000561137 502 287 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000561137 507 248 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000561137 563 272 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000561137 610 286 UTR3 Trans

Sequence

>TCONS_00186316 (2659 nt)
TTTTTCACACGCATACTCCCCCCACTCGTCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTGAGGTGGAATCTCGCTCTGTCACCCAGGCTA
GAGTGCAGTGTGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCATACCTCAACCTCCCGAGTAGCTGGGATTACAGGCACCTG
CCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGAACGGGGTTTCACCGTGTTGGCTGGGCTGGTCTCGAACTCCTGATCTCAAGTGATCTACCCAC
CTCAGCCTCCCAAAGTGTTGGGATTATAGGCATGAGCCACCATACTCAGCCTCGCCCTGCTCTTTATATACACAGAAATATACATGTATCTTTGTATTTG
TGTGTGTATGTGTGTGTATCTTAATTTTACGTCAAATCTGTCAGTCTTTTATAGTTTCTGTCTTGGTGTGACGCTAATAAAAGCCTTTTCCCTCAAGTTT
ATAAACACATTTGATCATGTTTTCTTTCAGTACTTCTGTGCTTTCGTTTTTTATATTTAAATATTTGATCCTTTTAGGCTTAATTTTAAAATAATAAACG
AGGCAGAGACCCAATTCCCCTAACTCAAATAACTGGTCGGTTGTCCCAAATGATCCAACTTTCCCCCACTGATTTGACAGGTTCCTTTCGTAATACATTG
CGTTCTCACATACACTTGTATCTAATTATTCTCTGTTTTGTTTCATTGACTTATCAGTCTACTGTTAACACCTGTATTGCATTCTTTTAACTATTATGTC
TTGTACATTTTAATTTATTTTATTTTATTTTTTAGAGACGGGGTCTTGCTGTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGCAATTCTCCCATC
TCAGCCTCCCAAAATGCTGGGATTACAGGCATAAGCCACCATGCCTGGCCCCTGTGCATTTTAATATGGGTGACAGCAGGGGTAGGGAAAGCAATCCCCC
TCACCCACAAGACATTAGTCTTTTTAGTCCTTTTTTCGGAATTTTCCTGGCTGTTCTCTTTCTTTTTATTTATTTATTTATTTTTGAGACAATCTCACTC
TGTCAGCCAGGCTAGAGTGCAGTGGCACAATCTCAGCTTACTGCAACCTCCGCCTCCTGGGCTCAAGAGATCCTCCTGCCTCAGGCTCCCGAGTAGCTGG
GACTATAGGCACGTACCACCACACCTGGCTAATTTTTGTATTTTTAGTACAGATGGGCTTTCACCACGTTGGCCAGGCTGGTCTCAAACTCCTGAGCTCA
AGTGATCTGCCCCCCTCGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACCGTGCCCAGCTTTTCTGGCTGTTCTCACGTTTATTCTTCTCATTGAG
CTTTAGATTATTTTATCAATTCCTCCAAAAGGTCTTATTGAGCTATAATCCAATTTGACTGAATCTATGGATTGATTTACATAGAAATGATGATTTACAT
GTCAGTTCTTAGCTTTGAAAGATTTTGTCTGTACTTATTGTCATGGTTTTATAGTTTTTCTATGTAGACACTATACATTTCTTAAGTTTTCTCCCCCTGA
ACAATTTTGTTTGTAATTGTTATTGTGACAGGGCTCTTGCGTTCCATTTCTTCTTCCAAAGATTGCTGTTTCTCATCTGTCAGTGGTTATTTTGACCAGT
TTTCCTCTCAGAATATGGCCTCAAGCCCCTAATTCCTCAGGTCGCTAACCCACCCTGTGTAGCCTTCCTAGTGGACAACAACCACCAGAAGGCAGGGGAA
GCCGCCAGAGGCTGTGGCACCCAGGCCAGCACTAACACGGTTCATTCCTTCTTCCCTTGCCCCACCTTCTAGAGGCCACTACTTTTGCTCAGTGTATGGG
GCACGGCTGATGGTACCAGCTGGCCAGGGGCTCATCGTGGTCATCTCCTCCCCAGGAAGCCTGCAGTATATGTTCAATGTCCCCTATGGTGTGGGCAAAG
CTGCGGTGAGGACCCAGTGGCATAGGAGCTGAGGAGTGTGACAAGCTGGCTGCTGACTGTGCCCACGAGCTGCGGCGCCATGGGGTCAGCTGTGTGTCTC
TGTGGCCGGGGATTGTGCAGACAGAACTGCTGAAGGAGCATATGGCAAAGGAGGAGGTCCTGCAGGATCCTGTGTTGAAGCAGATCCCAATATCCTGAGC
CTGAGTGGTAAGGTGCTGCCATCCTGTGACCTTGCTCGACGCTATGGCCTTCGGGATGTGGACGGCCGCCCCGTCCAAGACTATTTGTCTTTGAGCTCTG
TTCTCTCACACGTGTCCGGCCTGGGCTGGCTGGCCTCCTACCTGCCCTCCTTCCTCCGTGTGCCCAAGTGGATTATTGCCCTCTACACTAGCAAGTTCTA
ACCCTCCTGGTCTGACACTACGTCTCTGCTTGTCTTCTCATTTGGACTTGGTGGTTCGTCCTGTCTCAGTGAAACAGCAGCCTTTCTTGTTTACCCATAC
CCTTGATATGAAGAGAAGCCCTCTGCTGTGTGTCCGTGGTGAGTTCTGGGGTGCGCCTAGGTCCCTTCTTTGTGCCTTGGTTTTCCTTGTCCTTCTTTTT
ACTTTTTGCCTTAGTATTGAAAAATGCTCTTGGAGCTAATAAAAGTCTCATTTCTCTTTC

Expression



Full and truncated open reading frames discovered in TCONS_00186316

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.