Detailed information on ENST00000562009

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000581273 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) nonsense mediated decay ENST00000562009 735 358 UTR3 Trans

Sequence

>ENST00000581273 (3336 nt)
GCCTGCCTGCACCCAGGTGATTAAAAAGCTTTATTGCTCACACAAAGCCTGTTTGGTGGTCTCTTCACAGGGACACGCATGAAATTTGGTGCCATGACTC
GGATCAGGGGACCTCCCTTGGGAGATCAATCCCCTGTCCTCCTGCTCTTTGCTCAGTGAGAAAGATCCACCTATGACCTCAGGTCCTCAGACCAACCAGC
CCAAGGAACATCCCACCAATTTTAAACCCGATGCCGTCACTGCCACCAGGAGCCCTGTACTATCAGCCATGGTCAACCCCACCGTGTTCTTTGACATCGC
AGTCACGGCGAGCCCTTGGGTCACGTCTCCTTTGAGCTGTTTGCAGACAAGATTCCAAAAACAGCAGAAAACTTTCATGCTCTGAGCACTGGAGAGGAAG
GATTTGGTTATAAGGGTTCCTGCTTTCACATAATTATTCCAGGATTTATGTGTCAGGGTGGTGACTTCATATGCCATAATGGCACTGGTGGCAAGTCCAT
CTATGGGGAGAAATTTGATGATGAGAACTTCATCCTAAGGCATACACGTCCTGGCATCTTGTCCATGGCAAATGCTGGATCCAATACAAACGGTTCCCAG
TTTTTCATCTGCACTGACAAGACTGAGTGGTGGATGGCAAGCATGTGGTCTTTGGCAAGGTGAAAGAAGGCATGAATATTGTGGAGGCCACGGAGCGCTT
TGGGTCCAGGAATGGCAAGACCAGGAAGAAGATCACCATTGCTGACTGTGGACAACTCTAATAAGTTTGACTTGTGTTTTATCTTAACCACCAGACCATT
CCTTCTGTAGCTCAGGACAGCACCCTCCACCCCATTTGCTCGCAGTATCCTAGAATCTTTGTGCTCTCGCTGCAGTTCCCTTCCATGCCTAGCTGGACTG
CAGAGTTGAGTTAAAGTTTATGATTATGAAATAAAAACTAAATAACAACAAAAAATTGTTTATAACCAATGCTTGATCCCATATTCCTAGGAAAACAATT
AAAGCTTCAGGTATATTTGGTCTTCTGGTCAGCCATTTAAACATTTTATAAAGGGATTTCATTCCATTGTTATTTTCCATGCATGTTTTCTGGTTGTAGA
AAAGCTTTCCCATGCAAGAGGGCTGATGTTATAACAGTAGATTATTATGCTACAGTGTATTTTCACCAGATTAAAAAAAAAAGCTTTTTATGGTTTGAAT
CTGCTGGAAACATCAGAGAAAGACTGTCCTTGCCATCTACACTATAACAAAACTTCAGGACCTTGAACTTTGGGTTCATAATCTCACAACTGAGAAGGGC
CCCTCCATGCTCTTGGAGCTGTGCACCCACTGGAATGCTTAAGGTAAAACTAACTAGGGAAATTTCTCCCAAGAAGAAGATGACATCATTGATGTGAACA
GCTTTTCCCAAGTTCACAGATTAAGACTTCTACTATCATGAAACTCTTATTTTTGAATATTTTTTCTTGCTTATGCCTTCTACGAACAATAGAAGTGGAA
AAGGGGTCTGTTATGTGCACTTATGGGGAACATTTTTATTTGTGAAGGAGTTTGCAGCCAGCCTTATACATGGATAAAGGCCCAATGTATGTAAGAAACT
TTAATGGTAGATGTGTTAGCTCATAATCAATCAAAAACAAAAAATTGATTCACTCCACATAACCCACATCGTGGGTTAAAGAGAACATTGCCAGAAGTCC
TTCACTCTTCTGAAAGGGCATCATTTGTTAGGTCCTTTTTCCATGGTTTAAAGTAAAAGAAGCAATGATTAGAAATGTATCCCTCATGATAGGTTCCATA
GCAAATTCTACTCTAAAGGCTACAGACTCTAAATTCTCTTGTGAAAGTTATAATAGAATTGGCTAAACAGCGAAGTATCTGTGCAGCTGCTGGCACTTGT
GGCCTATACAGAAATACATCAAATGAAGACTATAGAAATTCAGTGGTAGGAGACTGACAAAGAAATTGATTAGTCAAGTCTCTCTCTGTTGCCCAGGCTG
AAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCGACTCCCAGGTTCAAGCAATCCTCCTGCCTTGGCCTCCCAAGTAGCTGGGATTACAGGTGCAC
GTGACCACACCCAGCCAATTTTTGTATTTTAGTAGAGATGGGGTTTCACCACGTTGGCCAGGCTCATCTTGAACTCCTGACCTCAAGTGAGCCACCTCAC
CCAGCCGTGAGTAAACTGTATCTAGCTCATTCTTAGATCCATTTGATTTTAGGAGGTTTGGTTTATGGGGACCTTGGGTAAGGAGTATACTCCCAAATTC
TTGGTATTATCCTCCTAATAGCCATAATAATGGTCTCCCTGACGAGCTGTATGCTCTCAAAGGTTTTAAATGCTTGCATGAGCCATCTCTAGAATGTCAT
ATGGTCTCTCTTCAACTGGAATAACAGGAGCTCAAAGAAATATGCAACCATGAGGACACCATAACCTATAAATGACATGCTGAGACCAGAAACCCAAAAT
GATGGTAACTGAGAGTGGCACTGAGGCCCTAGGTTTTGGTCACACTCTCACCTAAGTGAAAACCTGATCAAAAAGGGAATTTTTTTCAACAAAATTCTGG
GAGGCCGTTGTTTTGGACTGATCTCATGCACTAGGCCCCAACAAACCAAACAAAACCAAAATGGGGCCACTCATGCCAAGACTTTAAGGAAACACATAGA
TTCTAGAAAAGACTAGGTTTTGTTTTTTCTTCTGCAAATCACTACAACAAACATTTCTGACAGTATAGGTATCCACCCCCTAAAGTTTCCATTAAATCTT
TTAACCAAATTCATTTCCTCTCACCTAGAGACCATCAAGCTTCAGATGATCATGTAACAAAGGTTCCAGCCAGTTCCAAGTGAAGACACCACCCCTGGAC
ATCAAGAAGCTACCCTTCCTCCACTAGATAGAGCAGGGTGAGAGTTCCATGATCCCCAATAGGTAGGGACTATGCCCCAAGCCAGCATGAAGCAGTTACA
GAAAAAAGACCATCGGTCCCTCTGCCTCCCATAAAGATTTATGGGGATCACATCTCTTGAAGGGGCAGATGAGGCAGGAAAATAGGGTCTGAAGTGTGAA
GATCGATTCACACTTCAGCTATAACAGGAAATATCCTCTCCATAGGGTGTATGACTATGTAACTTGAATACTTCATCCTCTCCATTTACATAAGGTGTAT
CTGAAGTAACCAATGGAATCCTCTGGGGGTAAATGCCCCACAATTCTGTAACGGGACCTTTGAGCCCCTACGCTCCGCCTGCTCCCACACTGTGGTGTGT
ATGTTCATTTTCAATAAATCCCTTCATTCCTTCCTTA

Expression



Full and truncated open reading frames discovered in ENST00000581273

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.