Detailed information on ENST00000562077

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000424496 sense_intronic sense intronic ENST00000562077 555 289 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000562077 537 286 noncoding Trans
ENST00000524750 CD82 molecule protein coding ENST00000562077 505 232 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting prote... novel protein coding ENST00000562077 509 290 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000562077 504 254 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000562077 529 290 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000562077 542 291 UTR3 Trans

Sequence

>ENST00000562077 (1471 nt)
CGGCCTCCTCGCTTCTTAAAATGTCTGAGCTCTACGAAGTGGAACTGTTAGCCCTCCGTTTATTGCCTTACTTCACACTGAAATAAGCCAACGTTTATTT<br />TATTTTATTTATTTTATTATTTATTTTATTATTTTTTTTCGAGACGGAGTCTCGCTCTGTCCCAGGCTGGAGTGCCGTGGCGGGATCTCGACTCACTGCA<br />ACCTCCGCCTCCGTGTTCAAGCTATTCTACCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTA<br />GAGATGGGGTTTCACCATGTTGGCCAGGCTGATCTCGAACTGCTGACCTTGTGATCCTCCCGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGC<br />CACCGCGCCCGGCCCCCAACGTTTCTTTTTAAGCCTGTCATATCTCACATTAAATGTGTAAGTCTCTGAACTGTAGGGCTTTGAACAAAGGAAAGTTCCA<br />TGAGAATACTATATGATGCCAATTTCTACTGTTAGGAACGCGATAACAGAGTGCAGTGGGGGAGAAAATACCGTCCTCAAGATCTGAGAAACTGGAGAGG<br />AAAAGTCACAGGACAACCAACTTCTCTATGACATAGCCCAGCATCTGAGGAAAGTCCTGCAATAGTGGAGGTGGAGCAGAGGGTATGAGCTGGGAAGCAA<br />ATGGAGCAGGAGCTGGAGGCTGCCCCATCCACTCCAAGCCAGAGAACAAGCAGAGGCTGCCACAGGAGATCCTGGGCAAGTAATCAGCCACAGCATCTAG<br />ATTAGCATGAAGGAAACACTGGCCAAATTAAAAGATGAAACTTCCAAAAGAGTCTCGATCTATTGCCCAGGCTGCAGTGCAAAGGTGCAGTCTCGGCTCA<br />CTGCAACATCCACCTTCCGGGTTCAAGCAATTCTCGTGCCTCAGCCTCGCGAATAGCTGGGATTACAGTGCAAAGGGGAAGAGTCAGAAGGTGAATAAAT<br />ACTCACAGCCGAAGCTCTTCAAAAGACTTCACCGAGTACAGAGGGGAGTTTGGATCCCGCTGCAGGACTTCCACTTGGTTTGTGTTATCAACAAGGTTGC<br />TTCTGATCAGCTTGTTGAGTAAGGACTGGGCAGCTCTGTCCTCTGTCAGGAAAAAGAAAGCAAAGAATTTTAAAAAGTCCTTGAAACCTACCAGGCGTTT<br />ACTCTAATTCAACTGCCATTTGTATTTTAAATAATAATGTACTGAACATTCAAATTCAAGGTACGTCATAGTTTTGACTTATAAATTAAAATAGTTTTAT<br />TAAAGAAAAAAGTTATGATACATCACCCATTTAGGCCTCATATTCTTTTCCAGACTCTATTCTAACAGCCCTCTTTTCCTGCAGTTATCTATTCCTCCTA<br />TCCAGACCCACATATTTACTCCCCAATTTGTACTATATATAAACCTAAAGTAATTAATGTAGCAATCACAA

Expression



Full and truncated open reading frames discovered in ENST00000562077

In silico ORF/peptide predictions
>peptide 1 (95 aa)
MKLPKESRSIAQAAVQRCSLGSLQHPPSGFKQFSCLSLANSWDYSAKGKSQKVNKYSQPKLFKRLHRVQRGVWIPLQDFHLVCVINKVASDQLVE


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT143422 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9NUU7|DD19A_HUMAN (Evalue: 3.0E-18)