Detailed information on ENST00000562328

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000507518 hydroxysteroid (17-beta) dehydrogenase 11 processed transcript ENST00000562328 508 228 noncoding Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000562328 621 289 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000562328 621 290 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000562328 621 290 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000562328 631 291 UTR3 Trans

Sequence

>TCONS_00118919 (2047 nt)
TTGAGATAACTGTAGATTTAAATACGGTTGTAAGAAACAATACAGAGAGATCCTGTATACCTTCCACTTGGTTCCCCCACCATGCTAACATCTTGTATAA
TTGTTGTATAACATCACAGCCAAGAAAAAATCATTAGTATAGTCCACACACCTTCAGATTTGGCCGGATTTACGTGCACTGTATGAGATGTACATCTGTG
CATTTTTATCATACGTGTAGCTTTGTGTGACGCCAGCATTTTTAAGCAATTGAATAGTATCAGAGTGCATTACATCTGTTAAGGGTAAGTGTTGATGTGG
AAACGTATTTTAGTTACATATGCACATCATGACTGGATTGTAGAAATGTCTCTTGACTGTGAGTCACAGTGGAGAATTTTGAAAACCACAGGTCGTTCAG
TCATCAGACTTGATTTTATTTCACTAAAATGGGCTGCTAGAGAGCTCAAGGTACTCTGATTTCTAATTGGCTGCTCAGGGTGCCCCTGACCACTTACTTC
TGGTACTTGGAAAACCTAGATTAATTGGATATATTGACAGCAACATATGCATTCTCTACCCCATGAGTTATTTAAGGGGTTTTCAAGTGTAATTTTGACT
AGAAGCAGTTTTTGCTCTTTTTTTGTTTTAATTTTAGTTTTTAGAGACAGGGTCTCACTGTGTTGCCGAGGCTGTACTCAAGCTCCTGACCTCCGGAGTA
GCTGGAACTACAGGCACCTGCCACTATGTCCAGCTGAGTTTTTGCTTTCTTCCTTAGTAGAACATAACTAATGTTGGAGCTCACTGTACTCTTTTGCCAG
TAGTAGGAATCCGATTTCTGGTAAGTACTGTAGGTGACAGAACCAAGGTTGCTTAGAAGATATGGAGTTAGGAGAAAAATGAAAAGGCATAAATATTTTC
TACAGCAGTAAATCCTAAGGAAGTAACTAGTTCCAAGACACTGTCAACATTAAAAATCCATAGTGCAGGCTGAGCACAGTGGCTCACACCTGTAATCGTA
GCACTTTGTGAGGATGAGGAAGGAGGATTGCTTGATCCCGGGAGTTTGAGACCAGCCTGGGTAACGGTGAGACTCCTTCTCCATCTCTATAAAAATAAAT
CTGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAATGCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAAC
ATGGTGAAACCCCATCTCTACTAAAAAAAAATTAGCTGGGCATGGTGGCGGGTGCCTGTAATCCCAGCTACTCGGGAGGCGGAGGCAGGAGAATCACTTG
AACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATACGCCATTGCACTCCAGCCTGGACAACAAGAGCGAAACTCTGTCTCAAAAATAAATAAATGTGTAG
TGCAGCCTGGACAACATGGCAAGACCCTGCCTCTACAAAAAATAAAAATCGGCTGGATGTGGTGGTGCATGCCTGTGGTCCCAGCTACTCAAGAGGCTGA
GGCAGGAGGATTGCTTGAGCCCTGAAGGTCAAGGCTGCAATGAGCTGTGTCGTGCCACTCCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCCCAGAA
AAAAGAAAAATCCATACTGGTGTAAACCCGTATCCAGATTGACTCTTCTCTTAACAAGGACACACTTGGCGTTAGTATGGATCTAGCCTCAAAGACCCTC
GTCACAGATGAAGCAGCCCATCGTGACCAGTCGAGGCCTTAGGACCGCAGGAGGAATGTCTCAGGATGAGGGTCAAGCACACTGAGGGTGTGGGCTGGAA
AAAAGGGATCTAGTTGTTTCTTCCTAGTCTCAGGAAGCCAGTGCCCCAAGGGTTCACACCTGGTAAGTGTAGGCGTCCTTGGATATGGGCTGTAGAGGAA
CAGTTTGAATCCAGGTGCCGCCATCTAATAGCTATGTGACAGCAAATTTCTTAATCTGAGCCCTGGTAGCCTCATTTAAATTGGACATAATGCCACCTAC
CTGAGGATTTGTAAAAGGAAAAGAGAATAAATGTCTGTTACATCATAA

Expression



Full and truncated open reading frames discovered in TCONS_00118919

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.