Detailed information on ENST00000562328

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000507518 hydroxysteroid (17-beta) dehydrogenase 1... processed transcript ENST00000562328 508 228 noncoding Trans
TCONS_00030130 calcium/calmodulin-dependent protein kin... novel protein coding ENST00000562328 621 289 UTR3 Trans
TCONS_00107851 transient receptor potential cation chan... novel protein coding ENST00000562328 621 290 UTR5 Trans
TCONS_00107864 transient receptor potential cation chan... novel protein coding ENST00000562328 621 290 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain... novel protein coding ENST00000562328 631 291 UTR3 Trans

Sequence

>ENST00000562328 (2048 nt)
TTGAGATAACTGTAGATTTAAATACGGTTGTAAGAAACAATACAGAGAGATCCTGTATACCTTCCACTTGGTTCCCCCACCATGCTAACATCTTGTATAA<br />TTGTTGTATAACATCACAGCCAAGAAAAAATCATTAGTATAGTCCACACACCTTCAGATTTGGCCGGATTTACGTGCACTGTATGAGATGTACATCTGTG<br />CATTTTTATCATACGTGTAGCTTTGTGTGACGCCAGCATTTTTAAGCAATTGAATAGTATCAGAGTGCATTACATCTGTTAAGGGTAAGTGTTGATGTGG<br />AAACGTATTTTAGTTACATATGCACATCATGACTGGATTGTAGAAATGTCTCTTGACTGTGAGTCACAGTGGAGAATTTTGAAAACCACAGGTCGTTCAG<br />TCATCAGACTTGATTTTATTTCACTAAAATGGGCTGCTAGAGAGCTCAAGGTACTCTGATTTCTAATTGGCTGCTCAGGGTGCCCCTGACCACTTACTTC<br />TGGTACTTGGAAAACCTAGATTAATTGGATATATTGACAGCAACATATGCATTCTCTACCCCATGAGTTATTTAAGGGGTTTTCAAGTGTAATTTTGACT<br />AGAAGCAGTTTTTGCTCTTTTTTTGTTTTAATTTTAGTTTTTAGAGACAGGGTCTCACTGTGTTGCCGAGGCTGTACTCAAGCTCCTGACCTCCGGAGTA<br />GCTGGAACTACAGGCACCTGCCACTATGTCCAGCTGAGTTTTTGCTTTCTTCCTTAGTAGAACATAACTAATGTTGGAGCTCACTGTACTCTTTTGCCAG<br />TAGTAGGAATCCGATTTCTGGTAAGTACTGTAGGTGACAGAACCAAGGTTGCTTAGAAGATATGGAGTTAGGAGAAAAATGAAAAGGCATAAATATTTTC<br />TACAGCAGTAAATCCTAAGGAAGTAACTAGTTCCAAGACACTGTCAACATTAAAAATCCATAGTGCAGGCTGAGCACAGTGGCTCACACCTGTAATCGTA<br />GCACTTTGTGAGGATGAGGAAGGAGGATTGCTTGATCCCGGGAGTTTGAGACCAGCCTGGGTAACGGTGAGACTCCTTCTCCATCTCTATAAAAATAAAT<br />CTGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAATGCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAAC<br />ATGGTGAAACCCCATCTCTACTAAAAAAAAATTAGCTGGGCATGGTGGCGGGTGCCTGTAATCCCAGCTACTCGGGAGGCGGAGGCAGGAGAATCACTTG<br />AACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATACGCCATTGCACTCCAGCCTGGACAACAAGAGCGAAACTCTGTCTCAAAAATAAATAAATGTGTAG<br />TGCAGCCTGGACAACATGGCAAGACCCTGCCTCTACAAAAAATAAAAATCGGCTGGATGTGGTGGTGCATGCCTGTGGTCCCAGCTACTCAAGAGGCTGA<br />GGCAGGAGGATTGCTTGAGCCCTGAAGGTCAAGGCTGCAATGAGCTGTGTCGTGCCACTCCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCCCAGAA<br />AAAAGAAAAATCCATACTGGTGTAAACCCGTATCCAGATTGACTCTTCTCTTAACAAGGACACACTTGGCGTTAGTATGGATCTAGCCTCAAAGACCCTC<br />GTCACAGATGAAGCAGCCCATCGTGACCAGTCGAGGCCTTAGGACCGCAGGAGGAATGTCTCAGGATGAGGGTCAAGCACACTGAGGGTGTGGGCTGGAA<br />AAAAGGGATCTAGTTGTTTCTTCCTAGTCTCAGGAAGCCAGTGCCCCAAGGGTTCACACCTGGTAAGTGTAGGCGTCCTTGGATATGGGCTGTAGAGGAA<br />CAGTTTGAATCCAGGTGCCGCCATCTAATAGCTATGTGACAGCAAATTTCTTAATCTGAGCCCTGGTAGCCTCATTTAAATTGGACATAATGCCACCTAC<br />CTGAGGATTTGTAAAAGGAAAAGAGAATAAATGTCTGTTACATCATAA

Expression



Full and truncated open reading frames discovered in ENST00000562328

In silico ORF/peptide predictions
>peptide 1 (74 aa)
MHSLPHELFKGFSSVILTRSSFCSFFVLILVFRDRVSLCCRGCTQAPDLRSSWNYRHLPLCPAEFLLSSLVEHN

>peptide 2 (54 aa)
MWKRILVTYAHHDWIVEMSLDCESQWRILKTTGRSVIRLDFISLKWAARELKVL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT076899 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N7I0|GVQW1_HUMAN (Evalue: 6.0E-27)