Detailed information on ENST00000562471

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000562471 547 289 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000562471 538 291 CDS_UTR Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000562471 550 290 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000562471 550 290 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000562471 605 284 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000562471 617 289 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000562471 617 289 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000562471 617 289 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000562471 603 288 UTR5 Trans

Sequence

>TCONS_00235393 (2026 nt)
CCTGACCCTCTCCCTTTCCAGGACTGAAGCTTTCACACCCCCAGCCAGCAGCTGGCAGTCCCTCCCCAGGAACTGTCCTTCCCGGGAGAGCCACCTCACC
CAAGGTCACGCCCACACCCTAGAGGCAGCTCACATTCACTAAGTCCCTCCCCTCAATGCGGGACAACTCTGAAGGTCCTTGCAGACCAGGGCGCCCCTCC
ATTGCAAGTGCAGGCAGCCCAGCTTTTCCCTGTGCTCACTTCTCCCTCTCCCATGCCAGTGTGCTTCTTGAGGGCACTCCCAGCAAACTTGCTGCACACA
AACCTCAGTCTCCTGGGGAGCCTGTCCTGCAACAGCTTATTAGGTACCAGGCACGATCCTAGGCACTTTACGCATATTATTTCATACTATCCTCCCAACA
ACCCCAAGAGGCAGGCACTTTTATTATCAAAGGCTATGTAACTTGTCCAAGGTCACAGAGCTAGCAAGCCAGAGAGCCAGGGTTGTCATGCAGGGAGTTG
GGCTCCGGGGCTCTGAAATGTTACAACACTGTCTTAATTCCTATAGTCTAGCTTGAGGAAATTAGACAGAAGAAACAGTGAAGATGTATTCTGATTTGAG
GGGGGAATAAATCTCAGCCGGGCACGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAAGTTGAGGCGGGTGGATCATTTGAAGTCAGGAGTAGAAACT
AGCCCCATTTCTACTAAAAATACAAAAGAAAAAATTAGCCGCGTGTGGTGGTGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGC
TTGAACCCAGGACACAGAGGTTGCAGTGAGTCGAGATCGCGACACTGCACTCCAGCCTAGGGGACAGAACAAGACTCCGTCTCAAAAAAAAAAAAAAATC
TCTGTTGCCCCAGTTTTCTACCAGTCTCACTTTAGTTTCTGAATATGCAGCCCCCTGGTGTCTTAGTTGACTTTAATGGTTCTTATCCAGGGCCAATTTT
GCTTCCCAGAGGATATTTGGTGATATCTGGAAGATCTGGAGATATTTTTTCATTGACATCCTAGGGGGATAGTAAGGGCATTCAGCAGGTAGAGGCCAAG
GGTGCTACTAAATGTCCTACAATGTACAGGGCAGCCTCCCACAACAAATCTAGCTAAATGTCGGTAGTACTGAGGTTGAGAAACCCTGTGCTCTAGCTGG
AAGCCTGGTGTCCTGGCTGGTTTTACCCTGAAGGAGTCCCAGTGTGATGACTGCTTGGGAGTGGACTTTGGTGAAGGTGGTGAGAGATACTTGAGCATGG
GAGTGGAGAGAAGGTTTGGAGGGCAAACCTCCAAGGATTTCATGATCCTTGAAGGACAAATATTATCCCAAGTTAGTTCAAGGGAAGATCACACAGAGCT
TCTGGTTAATAGCAGTGGCTGAGCTCTGAAGGCACCCCTTTTCCTCGACCAGGAAGCTCCTAGGGTAATGTAGTGGACCAGGCATTTCCTACCCTCCTCC
CAACTCCCCTGTAAACGTGTACACTGATGGCCGGGCACATCTGTAATCCTGTGTAGCTCACACCTGTAATCCCAGCACTGTGGGAGGCTGAGGCAGGCGA
ATCACTTGAGGCCAGGAATTGGAGACCGGCCTCACCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGCTGTGGTTGTGCACGCCT
GTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATCGTTTGAACTCGGGAGGTGGAGGTTGCAGTCAGCCGAGATCACACCACTGCACTCCAGCCTGG
GTGACAGAGCGAGATACTGTCTCTAAAAAAAAAAGAAAAAAAATTAAATAACCTAGAATGGGCAGGGGGTTGTGGGGGATCCTCCTCCCTAAGCGCTTAT
CTTGGTGCTTCCAGCTCAGTCTGGCCAATTCCACCTCTATGAGATAAGGAGGGTTCAGAGAACCCAGTCACTTTGCTGTTTTTCTGCCCACAAGTTTCTC
TAATAAATCTTATTCTATGTCTACACA

Expression



Full and truncated open reading frames discovered in TCONS_00235393

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.