Detailed information on ENST00000562471

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding ENST00000562471 547 289 CDS Trans
ENST00000511184 E74-like factor 2 (ets domain transcript... nonsense mediated decay ENST00000562471 538 291 CDS_UTR Trans
TCONS_00027001 programmed cell death 4 (neoplastic tran... novel protein coding ENST00000562471 550 290 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic tran... novel protein coding ENST00000562471 550 290 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000562471 605 284 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000562471 617 289 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000562471 617 289 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000562471 617 289 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease ... novel protein coding ENST00000562471 603 288 UTR5 Trans

Sequence

>ENST00000562471 (2027 nt)
CCTGACCCTCTCCCTTTCCAGGACTGAAGCTTTCACACCCCCAGCCAGCAGCTGGCAGTCCCTCCCCAGGAACTGTCCTTCCCGGGAGAGCCACCTCACC<br />CAAGGTCACGCCCACACCCTAGAGGCAGCTCACATTCACTAAGTCCCTCCCCTCAATGCGGGACAACTCTGAAGGTCCTTGCAGACCAGGGCGCCCCTCC<br />ATTGCAAGTGCAGGCAGCCCAGCTTTTCCCTGTGCTCACTTCTCCCTCTCCCATGCCAGTGTGCTTCTTGAGGGCACTCCCAGCAAACTTGCTGCACACA<br />AACCTCAGTCTCCTGGGGAGCCTGTCCTGCAACAGCTTATTAGGTACCAGGCACGATCCTAGGCACTTTACGCATATTATTTCATACTATCCTCCCAACA<br />ACCCCAAGAGGCAGGCACTTTTATTATCAAAGGCTATGTAACTTGTCCAAGGTCACAGAGCTAGCAAGCCAGAGAGCCAGGGTTGTCATGCAGGGAGTTG<br />GGCTCCGGGGCTCTGAAATGTTACAACACTGTCTTAATTCCTATAGTCTAGCTTGAGGAAATTAGACAGAAGAAACAGTGAAGATGTATTCTGATTTGAG<br />GGGGGAATAAATCTCAGCCGGGCACGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAAGTTGAGGCGGGTGGATCATTTGAAGTCAGGAGTAGAAACT<br />AGCCCCATTTCTACTAAAAATACAAAAGAAAAAATTAGCCGCGTGTGGTGGTGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGC<br />TTGAACCCAGGACACAGAGGTTGCAGTGAGTCGAGATCGCGACACTGCACTCCAGCCTAGGGGACAGAACAAGACTCCGTCTCAAAAAAAAAAAAAAATC<br />TCTGTTGCCCCAGTTTTCTACCAGTCTCACTTTAGTTTCTGAATATGCAGCCCCCTGGTGTCTTAGTTGACTTTAATGGTTCTTATCCAGGGCCAATTTT<br />GCTTCCCAGAGGATATTTGGTGATATCTGGAAGATCTGGAGATATTTTTTCATTGACATCCTAGGGGGATAGTAAGGGCATTCAGCAGGTAGAGGCCAAG<br />GGTGCTACTAAATGTCCTACAATGTACAGGGCAGCCTCCCACAACAAATCTAGCTAAATGTCGGTAGTACTGAGGTTGAGAAACCCTGTGCTCTAGCTGG<br />AAGCCTGGTGTCCTGGCTGGTTTTACCCTGAAGGAGTCCCAGTGTGATGACTGCTTGGGAGTGGACTTTGGTGAAGGTGGTGAGAGATACTTGAGCATGG<br />GAGTGGAGAGAAGGTTTGGAGGGCAAACCTCCAAGGATTTCATGATCCTTGAAGGACAAATATTATCCCAAGTTAGTTCAAGGGAAGATCACACAGAGCT<br />TCTGGTTAATAGCAGTGGCTGAGCTCTGAAGGCACCCCTTTTCCTCGACCAGGAAGCTCCTAGGGTAATGTAGTGGACCAGGCATTTCCTACCCTCCTCC<br />CAACTCCCCTGTAAACGTGTACACTGATGGCCGGGCACATCTGTAATCCTGTGTAGCTCACACCTGTAATCCCAGCACTGTGGGAGGCTGAGGCAGGCGA<br />ATCACTTGAGGCCAGGAATTGGAGACCGGCCTCACCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGCTGTGGTTGTGCACGCCT<br />GTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATCGTTTGAACTCGGGAGGTGGAGGTTGCAGTCAGCCGAGATCACACCACTGCACTCCAGCCTGG<br />GTGACAGAGCGAGATACTGTCTCTAAAAAAAAAAGAAAAAAAATTAAATAACCTAGAATGGGCAGGGGGTTGTGGGGGATCCTCCTCCCTAAGCGCTTAT<br />CTTGGTGCTTCCAGCTCAGTCTGGCCAATTCCACCTCTATGAGATAAGGAGGGTTCAGAGAACCCAGTCACTTTGCTGTTTTTCTGCCCACAAGTTTCTC<br />TAATAAATCTTATTCTATGTCTACACA

Expression



Full and truncated open reading frames discovered in ENST00000562471

In silico ORF/peptide predictions
>peptide 1 (68 aa)
MRDNSEGPCRPGRPSIASAGSPAFPCAHFSLSHASVLLEGTPSKLAAHKPQSPGEPVLQQLIRYQARS

>peptide 2 (62 aa)
MPVCFLRALPANLLHTNLSLLGSLSCNSLLGTRHDPRHFTHIISYYPPNNPKRQALLLSKAM


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT112793 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 2.0E-21)