Detailed information on ENST00000563734

lncRNA-RNA interactions

Number of interactions: 50

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000563734 603 254 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000563734 609 259 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000563734 661 255 UTR5 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000563734 622 253 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000563734 669 254 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000563734 616 242 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000563734 642 256 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000563734 628 256 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000563734 649 253 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000563734 628 248 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000563734 645 254 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000563734 646 254 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000563734 605 253 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000563734 605 253 UTR3 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding ENST00000563734 641 251 noncoding Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding ENST00000563734 600 256 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000563734 536 252 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000563734 604 278 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000563734 604 278 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000563734 604 278 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000563734 633 253 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000563734 633 253 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000563734 633 253 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000563734 633 253 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000563734 633 253 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000563734 633 253 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000563734 633 253 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000563734 622 253 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000563734 645 253 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000563734 630 262 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000563734 608 255 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000563734 647 257 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000563734 647 257 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000563734 647 257 UTR5 Trans
TCONS_00150599 four and a half LIM domains 2 novel protein coding ENST00000563734 631 265 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000563734 630 253 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000563734 640 253 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000563734 640 253 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000563734 640 253 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000563734 620 256 UTR5 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000563734 612 253 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000563734 688 252 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000563734 626 254 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000563734 626 254 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000563734 651 253 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000563734 639 260 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000563734 651 253 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000563734 659 253 UTR5 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000563734 621 250 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000563734 629 253 UTR3 Trans

Sequence

>TCONS_00245543 (542 nt)
GCGCAGCGATGACGTAAACGCCTGGCCCAATGGGCGCCAGCGAGGAAGCGTTAAAGAGTCAAGGCAGTTTGTGGGAGTCGCGCTGGGGACGTTCAAGGTG
TCTCCTAGCCGATGGAGTCTCACTGTAGTCCAGATGGAGTGCAATGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCCCCGGTTCACGCCATTCTCTTG
CCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCGCCACCACACCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAG
GATGGTCTTGATTTTTCGACTTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCAAGCACTTCCTTG
AACACAGAGGTGACCATGAGGAGGGAGGCGTGAACCAGGATGACGGGGCAGCAGATGGAGCCTGCCTCCCTGAGACCTCAGGTGACCGAGTGCTGGACTG
CCTCCTCCTGCCTACATGGCTGAGAAATAAACTTCTTTTTCAA

Expression



Full and truncated open reading frames discovered in TCONS_00245543

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.