Detailed information on ENST00000563992

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000563992 526 256 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000563992 526 256 UTR3 Trans

Sequence

>ENST00000563992 (1870 nt)
GAGCAGACACCCAGCGCTGCCGGAACTCGGGGCGCGCATCCCGCAAGTCGGAACCCGGCGGATCGGATCCCGCAGATCGGAGACGGGGCCTGGAGGGTGG<br />CAGCACGCAAAGGGTGTCCCTGTCCCTCAAGGGGTCATGGCCTCCATGTTGCTCGCCCAGCGCCTGGCCTGCAGCTTCCAGCACAGCTACCGCCTGCTGG<br />TGCCTGGTAAGCCCCGGGGGTCTTGATAAGAACTGGTACTAATGGAAGATACCATCCAGACTAGGGATTCCTGGGCTGGAAGAGCCCTTGGGGATAAAGG<br />GACCAGCCAGTGAGTGTTTCTGGGACTGTCCCACTGTATTAGTCTGTTCTCATGCTGCTAATAAAGGTACACCTGAGACTGGGTATTTTATGAAGAAAAA<br />GAGGTTTAATGGTCTCACAGTTTCATATGGCTGGGGAGGCCTCACAATCATGGCGGAAGGTGAAGGAGGAACAAAGGCACGTCTTACATGGCTACAGGCA<br />AGAGAGCATGTGCAGGGGAACTCCCGTTTGTAAAAACATCAGATCGTGTGAGACTTACTCAATTGACTATCATGAGAACAGCATGGGAAAGACCCACCCC<br />CATGATTCAATTACCTCCCACTGGGTCCCTCCCATGACGTGGGAATTATGGGAGCTATGATTTAAGATGAGATTTGAATGAGGACACAGCCAAACCACAT<br />CACCCACTATCCATAAAACTGTCACCATCGCCACCTCCTTTCTCTCTCCCATCTCTGTCATATGATCCTGTCCCAAGTGCCTCGGTCTGATGGGATTGGA<br />TCCACCCTGGAGCCACTCTGCCTGCAGGTAGGCGGTGGCCTCCACAGCCAGATGGCCCCAGGCCATCTCTGCAGGGACCGCTGGGGAAAACACACATCTG<br />GGATCGCTGCTAAGGAACAAAGAAAGCCATAAGCGACTCTGAAATTGACCTAGAGCCCAGCTGTGCTTCAGGGTCACTGGATCACTGGATGGGAGGCACC<br />ATCTTAGGAATGTCTCACCCCCACTCTGCCCCACACCCATGGCCACTTGCACTGGCTCCTTCTTCCTTCTGTTTGACGTCTTTGAGACCTCCCTCCCAAT<br />AGTCCCATGAGGGAGGGAGGCTCAAGTGAATCCTATTTTACAGGTGAGAGAACTCAGGCTTAGAGAAGCAAAGCCATTTGCCCAAGGTCACACAGCCACT<br />TGCAAGCAACTCTGTCCGGCTCCAATGCTAACTACTCCTCCGTGTGCCTCCATGTGGCTCTGGAGACAGAGCCGCCAGCAGGAGCCTCCCTTCACATGCC<br />CCGAGAGTGGCCTCCTGCAGAGATATAAAGTGCCTGGCTCGGGGCTGGCCATGAAATAGGTTCAGAAAGACCAGTGAGCCTCCAGCCTGTCCCCAGCTCT<br />CTCACAGCCCCTGTGCTTGTCATCATGGTGTCCCTTGTTGGCAGGCCTTACTGCCTTCTGAAGACAAACTGCTAGCCGTGTCCTTGGTCTGCATGTTGAA<br />TGCTGGTGTGTATGTCCTGGGTGGCATAAACAGTAGGAGCGTTCGCCCCTCCCCAAGGAGTATGAGTAGGCTTTATTTTAAAATAAACATCTTGGCCGGG<br />CGCAGTGGCTCACAACTGTAATCCCAGCACTTTGGGAGGCGAGGTGGGCAGATCACCTGAGGTCAGGGGTCGAGACCAGCCTGGCCAACATGGTGAAACC<br />CCGTCTCTACCAAAAATACAAAAATTAGCCAGGTATGGTGGTGGATGCCTGTAATCCCAACTACTCAGCAGGCTGAGGCAGGAGAATCGCTTGAATCCAG<br />GAGGTAGAGGTGGCAGTGAGCTGGATCGTGCCACTGTACTCCAGCCTGGGCAACATCGAGGCTCTGTCTC

Expression



Full and truncated open reading frames discovered in ENST00000563992

In silico ORF/peptide predictions
>peptide 1 (83 aa)
MVSQFHMAGEASQSWRKVKEEQRHVLHGYRQESMCRGTPVCKNIRSCETYSIDYHENSMGKTHPHDSITSHWVPPMTWELWEL

>peptide 2 (79 aa)
ADTQRCRNSGRASRKSEPGGSDPADRRRGLEGGSTQRVSLSLKGSWPPCCSPSAWPAASSTATACWCLVSPGGLDKNWY

>peptide 3 (74 aa)
SRHPALPELGARIPQVGTRRIGSRRSETGPGGWQHAKGVPVPQGVMASMLLAQRLACSFQHSYRLLVPGKPRGS

>peptide 4 (69 aa)
EQTPSAAGTRGAHPASRNPADRIPQIGDGAWRVAARKGCPCPSRGHGLHVARPAPGLQLPAQLPPAGAW

>peptide 5 (56 aa)
MILSQVPRSDGIGSTLEPLCLQVGGGLHSQMAPGHLCRDRWGKHTSGIAAKEQRKP


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT140400 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 4.0E-18)