Detailed information on ENST00000564527

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000310455 protein phosphatase 1, regulatory subunit 3B protein coding ENST00000564527 584 287 UTR3 Trans
ENST00000422247 centrosomal protein 135kDa protein coding ENST00000564527 600 279 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000564527 600 281 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000564527 600 281 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000564527 594 302 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000564527 584 268 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000564527 658 283 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000564527 503 287 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000564527 613 284 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000564527 535 266 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000564527 623 282 noncoding Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000564527 604 278 UTR5 Trans

Sequence

>TCONS_00233718 (2676 nt)
GTGGACAGCATGCCCATGGCCTGCTGGGTGGCCAGAGTCCTTTTGTCCTGCGGTCCATATAAGAGGGTCTGGATCTGGAGACACTGTAGAACACCAAGCA
GCTATCATGAGGCTATGGAAGTGTCGCTGAGAGCAGGAAACTAAGGTCTCCCTTGAATGAGAGAAAGATGACCTCATTCTTAGGCCCTGCTGTGATGGAA
TTAGCATGCTCCTGGGATGTCTCCTAGTGACTGACCTTTGGTTTGGATGTTCTGAGGGATCTAGGCAAAAGTGAACAGTTTTAGCACTATTTCACAAAAC
TCTCTGTGACTATCTGTATGCAAAAAATAGATTTAAAAGTAGTATTTTTAAAAATAAAGGCAAGAACCTTGGTACTGACCAGAGGATGGGCTCCAGTTTC
TATTTTTAAATGTGGCCCTTGTTATAGCCTGGAAAAGATTTAAAAAAATAGTTTTGTTTTTTTTGTAAACACATACTCTACTTTTATTAATATATAGGCT
GTCTATACTCTTGACTACACAGCAATGTCTTAGTTATTAGGAACCAAATATTCAGCTTATGGACTACCCAGGGCTGGCTTTGGCTTGATTTCTCCCTTCT
GCTTACTTTAAGTCTTGCCATTTGATTGCTTGTAGTAGGCTAGGGCAAATCAAGGAGAGGAGAAAGATTAAAGTTGTGCCCAAAATGGCCAAAATAATTT
TGAGAAAGAATGAGGTGGAGAGGTGGAGGAACTTGCTTTACTGAATGCCAAAGACCCTTTTATTTTTTTAAATAAAGTAATTAAGACAGCATGTTTGTCA
CCCGGGGTAGACAAAAAGACCAGTGGAACAGGGCAGAGAGCCCAAGCCTTGACAGATGACAGAAATGGCCTTGCGGGATTGGTGAGGAAGAGGTGGGCTA
GTCAATAAATGGGTACTGGGACCGCTGGTTTTCCAAATGGAAGAAAATGGATCACTACCCCAAATCAAACACAAATATTAAGCTCAAGAAAGATTTGAAG
GACTAAGTGTGAAATGCAAAACTTGGAGCTTTTAGATGAAAATACTGGAAAATATATATATATATATTTTTTGATGGAGTCTCACTCTGTCGCCCAGACT
GGAGTGCAAGTGGGGTGATTTTGGCTCACTGCAACCTCCACCTCCTGGGTTCATGTGATTTTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGTGC
CCGCCACCACACTCAGCTAATTTTTGCATTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACTGCAGGTGATCCACCT
GCCTTGGCCTCCCAAAGTGCGGGGATTATAGGAGTGAGCCACCATGCCTGACCGGAAAATACGATCTTGAGGTAGGGAAGTATTTCTTAGACAAGATCTA
GACAAAGCAAAAGTGAAAGACTGATAAAATGTAACTATGTGAAAACCTAAAATATTTGTGCACCAAAATTCACCATAAGCAAAGTAGAAAGACAAGCCAC
GCTGAGGAAAGATTCTTGCAGTGCACAGAAATGAGAAAGGTTTAACATTCAGAATACATGAAGAATTCCTATAAGGTAATGAGAAATACCAAACCAAACC
AAAACCTCTCAATAGAATAACACTCAAAAGATATAAACAGATTATTCAAAGAGTTGAAATCTGATGAAATAAACATGCTTAATCTCATTAACAACCAGAA
ATACAAACTAAAACCTCAATGAGGGGGATCTGTGAAAATGTGCAGCTGTTACTCAGGGCCATTTTCATAGCAGCATCCTGCAGAAGTAGATTGGTGGTGT
CTCCCTTCCTCCCTTAACCTCCTGCCTAAGGTCCCAGAATTGCATCATAACATCTATTGAGGAATTTCAGATGATGAAGGTACTGATGGAACACATCCTA
TTTATTCATGGAGACAGTGCAGCAAGGACTGCAACTAGAGGGTCATTTAAGTTACAAGGCTACGTGACTCCATAATAGAAAATTGAGAAAAGCATACTAT
TCATTTCTGGTAAGGTTCCAAGCCAGGCTCGTCAAGCTATTACTTGTATTTTGTACTTACATGAAATGAAAAAGCTAAAGAAAGGTAAATTTTAAAAAAT
TGCTCTAATGCTGAGGATCTGAAATCACTACTCTTCTTTATACACATTATCCAATGCCAGATTACGTCCACGGGGGAGAAATTACTCAGAAACTTGAAAA
TTGTGCTTCTGTTTTCATGTCAATTCTCAAGGCTGATACTAAGAGAAAAGGTGACTTCGGAAGCCTTACTACGTGGAAGCGTGAAATGTGATAAATCTTT
CAAGAAATACAAGTACGCTTTCATTTACCAACCATTACAAGGCAGGCAGAAATGACTAACTTGGGGGAATTGAAGGAATAAACCAAAACGTAATTCATCA
GACAGGCTTCCCCTACAGAAACACAGTCAGGGGTAGTGGGTGGTTTTTCTGAGCCACCCAGATACCAGCCTCATCCTGGCTGGACCCACGTCTTTGTCCA
CATTCGCCACTTCCTGAAGCAGCTGTCTGCTGAACACCAGCAACACGCCAACCCTGTGGCTACTTCGGGGATGGAGTGGAGAATGGGCAGAAGTGAGCCT
TGCTCTCAGGGGGCTTCTAATGGAGTAGCGGAGAAAGATATTTTTAAAATACATAAATAAACGTGTCAACAACTTGT

Expression



Full and truncated open reading frames discovered in TCONS_00233718

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.