Detailed information on ENST00000564772

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000564772 570 297 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000564772 604 295 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000564772 542 301 UTR3 Trans
ENST00000395811 myosin phosphatase Rho interacting prote... protein coding ENST00000564772 529 307 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding ENST00000564772 537 299 CDS Trans
ENST00000549365 DNA-damage regulated autophagy modulator... nonsense mediated decay ENST00000564772 554 297 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000564772 560 299 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1,... novel protein coding ENST00000564772 637 301 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000564772 604 295 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000564772 604 295 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000564772 604 295 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000564772 570 297 UTR3 Trans

Sequence

>ENST00000564772 (3054 nt)
ATCACATGACCGACTTTAGTTACTTAATCACCAGCTGCTCCAGAGGTCAAAATGATACAGCATGGCCCAAGGTCCCCACCATAAATCACATTATTAGCAC<br />AAACTATCTGGCCTGGTATGGCCCAAGGCCTGAGGTATACAAAGACACCCCTACTTGGGAGGATATTCCAAGGACTTAGAGGTTATCTCCCAGGAGCCCA<br />TTAAGGCCAGTTTTTTCTTTGAGATGTGCTGGGTTTGGACACTTCAAGCCTGCTGAGTTAACCCTTATAGCACAGTCCCCAAATGCTGAGGGACCAACTG<br />GGCCTACAATAAGTTTGTATCTTTAAGGGTTAAGGTGTTTTACCCATACCTCCTTGCCTTATATCTCATGATAATATGAGGCTTTTGGAAGGCAGTGACT<br />TATTGTGGCTTGGGGCATGGGTTTTTGGAGTCAGGCTGACCTACTGGCTGTATGGCTTGAGACTTTGTCTCTTCATCTGTAAAATGGGGAAGTTAAAACT<br />TCATGGTGTGTATGTGTGTATGTGTGTGTTTAGACAGAATCTCGCTCTGTCACTCAGGCTAGAGTACAGTGGCGTGATCATAGCTCACTGCAGCCTCGGT<br />CTCCTAGGGTCAGGTGATCCTCCCATCTTAGCCTCCTGAGTAGCTGGGCATGTGCCACCACACCTGGCTACTTTTTAAATTTTTTTTTTTCTGTAGAGAC<br />GAGGTCTTTCTATGCTGTTCAGGCTGAACTTCATGGGTTTATTGGGGATGGCTAATGGATGACATTGGCGGTGGTCCTTGATACCAGATAAGCCCTCAGT<br />GTGAAGCAGCTCTTATTTTTCCTTGTCTTGAGATTGCTCTGGAATGGAAATTAGGCTTTTTTGAAGGTGTGACCCTTTTTGTTCATTTCTTCAGCAGTTA<br />CTTTTTATTTTTTAAATGTTTGACACACAGTCTCTGATAAATGATCATTCACCAATCACCGATTACTCTCCTTGCTCTGTTAAGTGTGACACTGTCCCTT<br />TGAGAATCTGGCGACAGCTATGTATCCCATCACCACACACCCCAAAAAAAAAATTTATGTCTGGTTCCAGGAGTTACCTTTTATGAGAAGTCCATCTGTG<br />AAGACCCTGGATGTTCAGAGAACTTCCTGGGAAAACACTGAAAGAAAATAAAGAGGCCGGGCCCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGG<br />CTGAGGTGGGCAGATAAGCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACGTGGCGAAACCCCATCTACTAAAAATACAAAAATTAGCTGGGCGTCGT<br />GGCGCATGCCTGTAGTTGCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAACCAAGATCATGCTAGTACA<br />CTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAATAAAATAAATAAAACAAAATAAAATAAATACAATTTCTGTTTCTAGCCCCTAAGTGGTAGC<br />ACTGGGTCTTGTTCCCTGAAAAAAACTAGGCTCAGAATCCACTCTCATTTCATCTCCCCTGATTTGATCTGAAAAGATTTTGTTTAGAGTACTACATGAA<br />TATATTATAAAACATGGGACAATCAGAATTGATAGTAAGAAGGCAAGTGGCTCTATTTGTACTTCCTCTCAATAGCTCCTAAAGGTAATGCTACCATTTT<br />CTGTTTGTACATAGTCTTCCAGACTTTAAATTTTTGAACATATAAATATTATCATCTTAAAGACGTATGGAAAAAACCATTTTGAATAGGTTATTCCAAA<br />ATGTAATTTAACAGATTGCTCTGGAGGATTGTTTGTTTGTTTGTTTTGGAGACAGAGTCCCGCTTGGTTGCTCAGGCTGCAGTGCAGTGGCACAAACACA<br />GCTCACTGCAACCTCTAACTCCTGCAAACACAGCTCACTGCAACCTCTAACTCCTGCAAACACAGCTCACTGCAACCTCTAACTCCTGCAAACACAGCTC<br />ACTGCAACCTCTAACTCCTGCAAACACAGCTCACTGCAACCTCTAACTCCTGGGCTCAAGCAGTCCTTTCACCTCAGCCTCCTGAGTAGCTGGACCATGA<br />CACCTACCTAACTTTTTATTTTTTGTAAAGAGGGGAATCACTATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATCCTTCCTCAGCCTCTCA<br />AAGAGTTGGGTTTACAGGCGTGAGCCACCGCACCTGGCTCCTGGAGCATTTCTGATGTGAACATGTGCTGATCTAACACCACTCCTTTTACCAGCTGCCT<br />GTTCTAGAGCAAACCATCTTTTTTGAGCATTCCACTTTGGCTAGGCCCTTAGGCTGTTAGCAGTTTTCATCGCTACTGGCAAAGCTGCAGTGGACGTTCT<br />CCTGCACATATAACCTCTTGATGCCACTGTATGAGTGAGTCTCTGCAAAATGAGAAGTAGAATTGCTGGGGTGAAAGGCATACATACTAACTTTTTTGAT<br />TAATTCCACCCATGTACCCTGATTTGGGCAGAATTTTAATCTCACTGTGAAATCAGAGCTTTGTTCTAGAGCCTTTCTTGGGGGTTCCATGGATCAGTGG<br />GTCAGCCGTCACTTGTGCCCTGGCCCATCCTCTGTCCAGCTTGGGCAGCATGCATCATTCATTCTGATTCCTTAATTTGCCATATGTGAAAACATGGTAA<br />TCTATACATTACTTGGGTGCTATTATTATATATAACTAGCTTTGGAGTCAGAATTAGCGTCTCATCCTGGCTCTACCACTTTCCAACTGTGCGACTGTGG<br />CCAAGTGACTCCCCTTCTCTGAGCCTCAGTTTTCCTCTTCTGTAAAATGGGGGTAAAGGGATAAGAACTATAGGGGGATCTCAGGGGATGGTTAAGAGAA<br />ATCCATGAGATAAGCAAACACATTATCTAGTTTAGTAAAGCTAAGCAATGAAGACTTAACAGCCCCATGGTGAAGGCTTAATACATGGTAGCTATAATGA<br />TTACTATTAATATTGTGAAATAAAAGGTTGTGATGAACCAACCATATCTTCTCA

Expression



Full and truncated open reading frames discovered in ENST00000564772

In silico ORF/peptide predictions
>peptide 1 (87 aa)
MRLLEGSDLLWLGAWVFGVRLTYWLYGLRLCLFICKMGKLKLHGVYVCMCVFRQNLALSLRLEYSGVIIAHCSLGLLGSGDPPILAS

>peptide 2 (58 aa)
HMTDFSYLITSCSRGQNDTAWPKVPTINHIISTNYLAWYGPRPEVYKDTPTWEDIPRT

>peptide 3 (56 aa)
MFDTQSLINDHSPITDYSPCSVKCDTVPLRIWRQLCIPSPHTPKKKFMSGSRSYLL


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT084499 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8WTZ3|YS049_HUMAN (Evalue: 7.0E-19)