Detailed information on ENST00000564772

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000564772 570 297 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000564772 604 295 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000564772 542 301 UTR3 Trans
ENST00000395811 myosin phosphatase Rho interacting protein protein coding ENST00000564772 529 307 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000564772 537 299 CDS Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000564772 554 297 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000564772 560 299 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000564772 637 301 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000564772 604 295 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000564772 604 295 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000564772 604 295 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000564772 570 297 UTR3 Trans

Sequence

>TCONS_00153158 (3053 nt)
ATCACATGACCGACTTTAGTTACTTAATCACCAGCTGCTCCAGAGGTCAAAATGATACAGCATGGCCCAAGGTCCCCACCATAAATCACATTATTAGCAC
AAACTATCTGGCCTGGTATGGCCCAAGGCCTGAGGTATACAAAGACACCCCTACTTGGGAGGATATTCCAAGGACTTAGAGGTTATCTCCCAGGAGCCCA
TTAAGGCCAGTTTTTTCTTTGAGATGTGCTGGGTTTGGACACTTCAAGCCTGCTGAGTTAACCCTTATAGCACAGTCCCCAAATGCTGAGGGACCAACTG
GGCCTACAATAAGTTTGTATCTTTAAGGGTTAAGGTGTTTTACCCATACCTCCTTGCCTTATATCTCATGATAATATGAGGCTTTTGGAAGGCAGTGACT
TATTGTGGCTTGGGGCATGGGTTTTTGGAGTCAGGCTGACCTACTGGCTGTATGGCTTGAGACTTTGTCTCTTCATCTGTAAAATGGGGAAGTTAAAACT
TCATGGTGTGTATGTGTGTATGTGTGTGTTTAGACAGAATCTCGCTCTGTCACTCAGGCTAGAGTACAGTGGCGTGATCATAGCTCACTGCAGCCTCGGT
CTCCTAGGGTCAGGTGATCCTCCCATCTTAGCCTCCTGAGTAGCTGGGCATGTGCCACCACACCTGGCTACTTTTTAAATTTTTTTTTTTCTGTAGAGAC
GAGGTCTTTCTATGCTGTTCAGGCTGAACTTCATGGGTTTATTGGGGATGGCTAATGGATGACATTGGCGGTGGTCCTTGATACCAGATAAGCCCTCAGT
GTGAAGCAGCTCTTATTTTTCCTTGTCTTGAGATTGCTCTGGAATGGAAATTAGGCTTTTTTGAAGGTGTGACCCTTTTTGTTCATTTCTTCAGCAGTTA
CTTTTTATTTTTTAAATGTTTGACACACAGTCTCTGATAAATGATCATTCACCAATCACCGATTACTCTCCTTGCTCTGTTAAGTGTGACACTGTCCCTT
TGAGAATCTGGCGACAGCTATGTATCCCATCACCACACACCCCAAAAAAAAAATTTATGTCTGGTTCCAGGAGTTACCTTTTATGAGAAGTCCATCTGTG
AAGACCCTGGATGTTCAGAGAACTTCCTGGGAAAACACTGAAAGAAAATAAAGAGGCCGGGCCCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGG
CTGAGGTGGGCAGATAAGCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACGTGGCGAAACCCCATCTACTAAAAATACAAAAATTAGCTGGGCGTCGT
GGCGCATGCCTGTAGTTGCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAACCAAGATCATGCTAGTACA
CTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCAAAAATAAAATAAATAAAACAAAATAAAATAAATACAATTTCTGTTTCTAGCCCCTAAGTGGTAGC
ACTGGGTCTTGTTCCCTGAAAAAAACTAGGCTCAGAATCCACTCTCATTTCATCTCCCCTGATTTGATCTGAAAAGATTTTGTTTAGAGTACTACATGAA
TATATTATAAAACATGGGACAATCAGAATTGATAGTAAGAAGGCAAGTGGCTCTATTTGTACTTCCTCTCAATAGCTCCTAAAGGTAATGCTACCATTTT
CTGTTTGTACATAGTCTTCCAGACTTTAAATTTTTGAACATATAAATATTATCATCTTAAAGACGTATGGAAAAAACCATTTTGAATAGGTTATTCCAAA
ATGTAATTTAACAGATTGCTCTGGAGGATTGTTTGTTTGTTTGTTTTGGAGACAGAGTCCCGCTTGGTTGCTCAGGCTGCAGTGCAGTGGCACAAACACA
GCTCACTGCAACCTCTAACTCCTGCAAACACAGCTCACTGCAACCTCTAACTCCTGCAAACACAGCTCACTGCAACCTCTAACTCCTGCAAACACAGCTC
ACTGCAACCTCTAACTCCTGCAAACACAGCTCACTGCAACCTCTAACTCCTGGGCTCAAGCAGTCCTTTCACCTCAGCCTCCTGAGTAGCTGGACCATGA
CACCTACCTAACTTTTTATTTTTTGTAAAGAGGGGAATCACTATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATCCTTCCTCAGCCTCTCA
AAGAGTTGGGTTTACAGGCGTGAGCCACCGCACCTGGCTCCTGGAGCATTTCTGATGTGAACATGTGCTGATCTAACACCACTCCTTTTACCAGCTGCCT
GTTCTAGAGCAAACCATCTTTTTTGAGCATTCCACTTTGGCTAGGCCCTTAGGCTGTTAGCAGTTTTCATCGCTACTGGCAAAGCTGCAGTGGACGTTCT
CCTGCACATATAACCTCTTGATGCCACTGTATGAGTGAGTCTCTGCAAAATGAGAAGTAGAATTGCTGGGGTGAAAGGCATACATACTAACTTTTTTGAT
TAATTCCACCCATGTACCCTGATTTGGGCAGAATTTTAATCTCACTGTGAAATCAGAGCTTTGTTCTAGAGCCTTTCTTGGGGGTTCCATGGATCAGTGG
GTCAGCCGTCACTTGTGCCCTGGCCCATCCTCTGTCCAGCTTGGGCAGCATGCATCATTCATTCTGATTCCTTAATTTGCCATATGTGAAAACATGGTAA
TCTATACATTACTTGGGTGCTATTATTATATATAACTAGCTTTGGAGTCAGAATTAGCGTCTCATCCTGGCTCTACCACTTTCCAACTGTGCGACTGTGG
CCAAGTGACTCCCCTTCTCTGAGCCTCAGTTTTCCTCTTCTGTAAAATGGGGGTAAAGGGATAAGAACTATAGGGGGATCTCAGGGGATGGTTAAGAGAA
ATCCATGAGATAAGCAAACACATTATCTAGTTTAGTAAAGCTAAGCAATGAAGACTTAACAGCCCCATGGTGAAGGCTTAATACATGGTAGCTATAATGA
TTACTATTAATATTGTGAAATAAAAGGTTGTGATGAACCAACCATATCTTCTCA

Expression



Full and truncated open reading frames discovered in TCONS_00153158

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.