Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000263026 | eukaryotic elongation factor-2 kinase | protein coding | ENST00000564977 | 552 | 283 | UTR3 | Trans | |
ENST00000276431 | tumor necrosis factor receptor superfamily, member 10b | protein coding | ENST00000564977 | 540 | 291 | UTR3 | Trans | |
ENST00000359543 | epithelial membrane protein 2 | protein coding | ENST00000564977 | 608 | 288 | UTR3 | Trans | |
ENST00000399120 | holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) | protein coding | ENST00000564977 | 541 | 285 | UTR5 | Trans | |
ENST00000427746 | holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) | protein coding | ENST00000564977 | 541 | 285 | UTR5 | Trans | |
ENST00000473091 | UBA domain containing 2 | processed transcript | ENST00000564977 | 543 | 290 | noncoding | Trans | |
ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000564977 | 584 | 290 | CDS | Trans | |
ENST00000549365 | DNA-damage regulated autophagy modulator 1 | nonsense mediated decay | ENST00000564977 | 559 | 281 | CDS_UTR | Trans | |
TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | ENST00000564977 | 657 | 272 | UTR3 | Trans | |
TCONS_00030588 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000564977 | 651 | 292 | UTR3 | Trans | |
TCONS_00041296 | RIC3 acetylcholine receptor chaperone | novel protein coding | ENST00000564977 | 601 | 292 | UTR3 | Trans | |
TCONS_00041298 | RIC3 acetylcholine receptor chaperone | novel protein coding | ENST00000564977 | 601 | 292 | UTR3 | Trans | |
TCONS_00075813 | forkhead box N3 | novel protein coding | ENST00000564977 | 614 | 290 | UTR5 | Trans | |
TCONS_00075827 | forkhead box N3 | novel protein coding | ENST00000564977 | 614 | 290 | UTR3 | Trans | |
TCONS_00089062 | eukaryotic elongation factor-2 kinase | novel protein coding | ENST00000564977 | 552 | 283 | UTR3 | Trans | |
TCONS_00089065 | eukaryotic elongation factor-2 kinase | novel protein coding | ENST00000564977 | 552 | 283 | UTR3 | Trans | |
TCONS_00089066 | eukaryotic elongation factor-2 kinase | novel protein coding | ENST00000564977 | 552 | 283 | UTR3 | Trans | |
TCONS_00095049 | epithelial membrane protein 2 | novel protein coding | ENST00000564977 | 608 | 288 | UTR3 | Trans | |
TCONS_00095050 | epithelial membrane protein 2 | novel protein coding | ENST00000564977 | 608 | 288 | UTR3 | Trans | |
TCONS_00095052 | epithelial membrane protein 2 | novel protein coding | ENST00000564977 | 608 | 288 | UTR3 | Trans | |
TCONS_00107851 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | ENST00000564977 | 619 | 294 | UTR5 | Trans | |
TCONS_00118919 | potassium channel tetramerization domain containing 1 | novel protein coding | ENST00000564977 | 615 | 284 | UTR3 | Trans | |
TCONS_00135884 | zinc finger protein 347 | novel protein coding | ENST00000564977 | 590 | 293 | UTR5 | Trans | |
TCONS_00141404 | GLI family zinc finger 2 | novel protein coding | ENST00000564977 | 608 | 272 | UTR5 | Trans | |
TCONS_00147100 | ATPase family, AAA domain containing 2B | novel protein coding | ENST00000564977 | 601 | 271 | UTR3 | Trans | |
TCONS_00202828 | myotubularin related protein 12 | novel protein coding | ENST00000564977 | 600 | 288 | UTR3 | Trans | |
TCONS_00203984 | family with sequence similarity 169, member A | novel protein coding | ENST00000564977 | 602 | 285 | UTR5 | Trans | |
TCONS_00203985 | family with sequence similarity 169, member A | novel protein coding | ENST00000564977 | 602 | 285 | UTR5 | Trans | |
TCONS_00235393 | processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) | novel protein coding | ENST00000564977 | 602 | 290 | UTR5 | Trans | |
TCONS_00240688 | metastasis suppressor 1 | novel protein coding | ENST00000564977 | 607 | 281 | CDS_UTR | Trans | |
TCONS_00240688 | metastasis suppressor 1 | novel protein coding | ENST00000564977 | 607 | 288 | UTR3 | Trans |
>TCONS_00240688 (3920 nt)
AAATATTTGCATACAGACATTTGAGGCTGCTCTGTATATTACAGGCAAGAACTGGAAACTGTTCGGCTGCAGGGTGACAGCTAACTAGATTGTGGTTTAT
TAGGGGAATGAGCCTTTCTTTGTGTATGACAACTATGAAAACTATTGAGAAGAAATAGTTACGTGATACAGTCATAATCCTCAAAAACGGAGAATCAGGA
ATTATGATCAAATAGTGATAGTAACAAGGAAAACATCTGTCTAAATAATTACTGAGTAGAAATAGGTTCGGAATTTGTAAATAGTCATTAATTTGGGAGA
TTGGGGTTTTTTTTGTTTTGTTTTTTGTTTGTTTTTCATTATTTTGTGCTATTATTCATACGTGTACATTTCTACTTCAGTTTTTATTATCCATTACATA
ACATACATGCTTGATTATTTGCTTCAAGGAAATACACCTTTATAAGTAATACTCAATAACTACTGGGTTTGAGAATGAAGGTGTCAGAACGAATGAGATT
GTCCTATGAAAGAAGAGGCAGGAGCCAGGGAGGAGGATCCCACCCGGCCGGGGCTCAGCCAGGAGGCAGGGCCATTGGGGCAGGGTGGCAGTCCAAGGAA
CCGCTCTGGGAAGGTTTGCAAAGGTCGGGGTCCCCCCTGCCAGGTGATCGAATTATCGTGGAGTGTCTGGAAGGCGGGGGAAGTTTTGTTGAGTTCACCA
AATAACTCAGACCAACTGGAAACCAAGTGGAGTTTCTACAGGACCAACTAGAATAGGGATCAGCTACATGGGGGCGGGGGGAGGGGGGCAGGGAACGGTG
TCTGTCTTCATTGCAGCTCTGTCTGCAGAGCCAGCACTGTGATACCTCATAGTAGGTGCTCAGTGAATGTCTGTGAAGTGAATTACTATCTAGACAAGGA
TGAGACTGGTATGACTCTCCAAAGCTTTCCCACCTCCAAAACCTCGGCTTGTGGGGAATCTCCAGTAGGGGGCACTGTGGACACGGTTCGCATCTGCCTC
CCAAGGCTGGGCTCCGCGTCAAAAAAAAAAAAAAAAAATGAGACTGAGCCAGGTGCAGTGGTCACTCCTGTTATCTCAGCACTTTGCGTGGCCAAGGCGG
GAGGATGTCTTGAGGCCAGGAGTTCAAGACTAGGCTGGGCAACATAGCAAGACCCCATCTCTACAAAAAAATTTTTAAATTAGCCAGAGGTGGTGGCATG
CACCCGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGAAGATTGCTCGAGCCCAGGAGTTCAAGGCTGCAGTGAGCTCTGATTGTGCCACTGCACTCCAGC
CTGAGTGACAGAGCAAAACCTGGTTTCCTAAGGGGGGGATAAAAGAGGGAGAGATGAGATCGGGGTGTCCCGCTTCTGTGCATGTGGAGGGGGTAACTGG
GAACCGTGTACTGTAGGGGATCGCACACCTTGGGGTGGAAACAGCAGCTCTCCGGAGTTGCATGGGAGCCATGGGCAGTGGTCCTGGCTGGTGAAATGAT
TCTAGCCACGTGGCCCACCCAGGGGGCAAAACAATAGAAACCTTCAGAAATGAAACGTCACCTGGCTGCAAGAAGATAGTCCCACAGGCGCCCTAGAGAT
GGGGATGCCAAGTGGCTTCTCGGGAAGCTGTAAGAATCCACAGGGCATTGTAAGATGGAGGGAAATATTAAGTTTTCTTCGTAAAGAGGTGAGGGGGGCG
AGAGCAGCAAAGGACACTGGAAAATGAGAAGCATGGATGGGAAGTGTTGCATTGAGCATAATTTGGAGGTAAAATCTCCAACACCGTAACTGAGTGGCCT
GGGGACCTGATAGAAAGCCCTGCTCAGGACTAAGGCAGAGTTCCCAGTTATATCGCAGATACAAAGAGACCAGGAACACGCTTGTAATCACAGCACTTAG
GGAGGCTGAGGCGGGTGGATGACCTGAGGTCAGGAGTTCGAGACCAGCCTAGCCAACATGGTGAAACCCCCATCTCTACTAAAAATACAAAAATTAGCCA
GGCGTGGTGGCACATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGTGGGAGAATCGCTTGAGCCCGGGAGGCAGGGGTTGCAGCGAGCTGAGATCGTA
CCACTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCTCAAAAAGAAAAAAAAAAAAGAGAGAAATCAGGAACATCATGAAAGATACAGCAAAATGT
TTTACCCCAGCCCACTGCACCACACCTGGGATTGTGACAATTAACTTGATAAATTGTTCCTTTTCCTGTTCGGAACTGACTAGGTTGTGCGTGGATGGAC
CAGTGAAAAGAAAATCCTGTTTGGGTAGGGAAGAGGGAAGTAGAAAACCTCTTTCGTATTCTTGGTGTCAAGAAATGGGAAGAGAATGAGGGAGCAGAGA
CCTGGGTTGAGTGTTGGCTCTGCACTAAACAGCTGTGTGATCTTGGTCTAGTGCCTTAACCTCTCTGAGCCTCAGTTTGTACATCAGTAACATTGGGATA
ATGACATCCACATGCCCACTTCACAGAGCTGCTGTGAGGACTGGATGAGAAATGTAGAGAAGTATTTCGGACACCATAAAGCTCAAATACAAGGTGTTGG
TTAGGAAAAGTTTCAACTGACTTGTACCCACCTGATACCCCTCCATCAGCATAAGCGTGTATGAGGATGTTAGGTACATGTGTTGTGAGTGAAAGCTCTG
GAACACCCGAGTAGAGCTTTCTGCAAATCAGCTTCTCCTTCAGAGGAGACCATTTTGTTTTGCTTTCCAGCAGTTACTTGAAGAAGCCTTATCTGAAGTC
ACAACAGTGACTTCAGGAATAGAAGGGACCAATGGCCAGCTTGCTGAAATGTAATGCCATTCTTAAAAGCCAGCTAAGAATCAGACCGTATTAGTTAAGG
ACCCATAAGAGTAGACATTTAGAAAAAGTGAAAAATGGCAAGAGTGGCCCAATCTTTTGAGAGTTTAGAGAAAATATCATTTGGAAAGGGAGTAGCTCTC
CTTCTATTTTAGCCTTATTATTACGGTATCTATAAAGCAATGCCATATTCTAAATCTGCAGAAATAAAATTCTAAGGGGCGAAAGTCCAAGGCAGAAGTC
AAAAGTTTTGCAAGGAAACCGATGAGGTTGCTGACCTGAGCTGGGCAGGGTTGAACAGGCGAGTGCCAAGATCAAGGTCTCTGATTGTCTCTCCTTGAAA
GGTAAGCAGAGAACTAGGGCTATCCCATAAATTAAGTGGGAGATTGGAAAGGGGTGCGGACTTCTGTATTGGGGAGAAGGTCTTGGATGAACTGGGGCAG
AGAACTGCCAGAGAGAGTACCTAGGAATACGTTGTTAGCAGGAGAAAGACCAAGTTCAGATGCAGACTTGGGAAAGTAGGTAACTTGACCAAAGGTAGCA
AAATTAGACTACCCAACTGGATTGTGAATGCAGTTTATGAAATGGATCAGGACAGGAGCAAAAATAGATTTTCTAGAAACTGCAGACTCCTGTGATTGGA
GCAGTATACAAAGTACAGCAACATCAGACTAGATCTCACCTGAGGTGCTGGGTGAGAAATCTTAGGGACCAGATGGAAGAGGGCCTGTGTATAAAGACAT
TAGGAAGGAGGTTTGGGAGGGCAGCCTGACTTGTCTCCAGAGAAAGTTAGAACTGGTTGACTTAGCAACCAAGGGACACTGGGTCAAAGACGAGGAATCA
GGACGTCGGTGCCTAGTGACTGAGCGCCAGCCCAGCCCATTTCTCTACATTGCCATGGGCTAAACCCAGTGTGCTGTAAACTCTTCAGTTCCTTTGGTTA
TGGATTTTGTATCTTTTCTGTGTTTCTTAATAAAGTTCTTTTGAAAAATGGGAACCTTTCTCAGATGGGAATTTTGTATCTTTCCTCTGTTTCTTAATAA
AGTTCTTTTGAAAAATTGGAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.