Detailed information on ENST00000564977

lncRNA-RNA interactions

Number of interactions: 31

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000564977 552 283 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000564977 540 291 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000564977 608 288 UTR3 Trans
ENST00000399120 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000564977 541 285 UTR5 Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000564977 541 285 UTR5 Trans
ENST00000473091 UBA domain containing 2 processed transcript ENST00000564977 543 290 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000564977 584 290 CDS Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000564977 559 281 CDS_UTR Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000564977 657 272 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000564977 651 292 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000564977 601 292 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000564977 601 292 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000564977 614 290 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000564977 614 290 UTR3 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000564977 552 283 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000564977 552 283 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000564977 552 283 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000564977 608 288 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000564977 608 288 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000564977 608 288 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000564977 619 294 UTR5 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000564977 615 284 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000564977 590 293 UTR5 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding ENST00000564977 608 272 UTR5 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000564977 601 271 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000564977 600 288 UTR3 Trans
TCONS_00203984 family with sequence similarity 169, member A novel protein coding ENST00000564977 602 285 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000564977 602 285 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000564977 602 290 UTR5 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000564977 607 281 CDS_UTR Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000564977 607 288 UTR3 Trans

Sequence

>TCONS_00240688 (3920 nt)
AAATATTTGCATACAGACATTTGAGGCTGCTCTGTATATTACAGGCAAGAACTGGAAACTGTTCGGCTGCAGGGTGACAGCTAACTAGATTGTGGTTTAT
TAGGGGAATGAGCCTTTCTTTGTGTATGACAACTATGAAAACTATTGAGAAGAAATAGTTACGTGATACAGTCATAATCCTCAAAAACGGAGAATCAGGA
ATTATGATCAAATAGTGATAGTAACAAGGAAAACATCTGTCTAAATAATTACTGAGTAGAAATAGGTTCGGAATTTGTAAATAGTCATTAATTTGGGAGA
TTGGGGTTTTTTTTGTTTTGTTTTTTGTTTGTTTTTCATTATTTTGTGCTATTATTCATACGTGTACATTTCTACTTCAGTTTTTATTATCCATTACATA
ACATACATGCTTGATTATTTGCTTCAAGGAAATACACCTTTATAAGTAATACTCAATAACTACTGGGTTTGAGAATGAAGGTGTCAGAACGAATGAGATT
GTCCTATGAAAGAAGAGGCAGGAGCCAGGGAGGAGGATCCCACCCGGCCGGGGCTCAGCCAGGAGGCAGGGCCATTGGGGCAGGGTGGCAGTCCAAGGAA
CCGCTCTGGGAAGGTTTGCAAAGGTCGGGGTCCCCCCTGCCAGGTGATCGAATTATCGTGGAGTGTCTGGAAGGCGGGGGAAGTTTTGTTGAGTTCACCA
AATAACTCAGACCAACTGGAAACCAAGTGGAGTTTCTACAGGACCAACTAGAATAGGGATCAGCTACATGGGGGCGGGGGGAGGGGGGCAGGGAACGGTG
TCTGTCTTCATTGCAGCTCTGTCTGCAGAGCCAGCACTGTGATACCTCATAGTAGGTGCTCAGTGAATGTCTGTGAAGTGAATTACTATCTAGACAAGGA
TGAGACTGGTATGACTCTCCAAAGCTTTCCCACCTCCAAAACCTCGGCTTGTGGGGAATCTCCAGTAGGGGGCACTGTGGACACGGTTCGCATCTGCCTC
CCAAGGCTGGGCTCCGCGTCAAAAAAAAAAAAAAAAAATGAGACTGAGCCAGGTGCAGTGGTCACTCCTGTTATCTCAGCACTTTGCGTGGCCAAGGCGG
GAGGATGTCTTGAGGCCAGGAGTTCAAGACTAGGCTGGGCAACATAGCAAGACCCCATCTCTACAAAAAAATTTTTAAATTAGCCAGAGGTGGTGGCATG
CACCCGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGAAGATTGCTCGAGCCCAGGAGTTCAAGGCTGCAGTGAGCTCTGATTGTGCCACTGCACTCCAGC
CTGAGTGACAGAGCAAAACCTGGTTTCCTAAGGGGGGGATAAAAGAGGGAGAGATGAGATCGGGGTGTCCCGCTTCTGTGCATGTGGAGGGGGTAACTGG
GAACCGTGTACTGTAGGGGATCGCACACCTTGGGGTGGAAACAGCAGCTCTCCGGAGTTGCATGGGAGCCATGGGCAGTGGTCCTGGCTGGTGAAATGAT
TCTAGCCACGTGGCCCACCCAGGGGGCAAAACAATAGAAACCTTCAGAAATGAAACGTCACCTGGCTGCAAGAAGATAGTCCCACAGGCGCCCTAGAGAT
GGGGATGCCAAGTGGCTTCTCGGGAAGCTGTAAGAATCCACAGGGCATTGTAAGATGGAGGGAAATATTAAGTTTTCTTCGTAAAGAGGTGAGGGGGGCG
AGAGCAGCAAAGGACACTGGAAAATGAGAAGCATGGATGGGAAGTGTTGCATTGAGCATAATTTGGAGGTAAAATCTCCAACACCGTAACTGAGTGGCCT
GGGGACCTGATAGAAAGCCCTGCTCAGGACTAAGGCAGAGTTCCCAGTTATATCGCAGATACAAAGAGACCAGGAACACGCTTGTAATCACAGCACTTAG
GGAGGCTGAGGCGGGTGGATGACCTGAGGTCAGGAGTTCGAGACCAGCCTAGCCAACATGGTGAAACCCCCATCTCTACTAAAAATACAAAAATTAGCCA
GGCGTGGTGGCACATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGTGGGAGAATCGCTTGAGCCCGGGAGGCAGGGGTTGCAGCGAGCTGAGATCGTA
CCACTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCTCAAAAAGAAAAAAAAAAAAGAGAGAAATCAGGAACATCATGAAAGATACAGCAAAATGT
TTTACCCCAGCCCACTGCACCACACCTGGGATTGTGACAATTAACTTGATAAATTGTTCCTTTTCCTGTTCGGAACTGACTAGGTTGTGCGTGGATGGAC
CAGTGAAAAGAAAATCCTGTTTGGGTAGGGAAGAGGGAAGTAGAAAACCTCTTTCGTATTCTTGGTGTCAAGAAATGGGAAGAGAATGAGGGAGCAGAGA
CCTGGGTTGAGTGTTGGCTCTGCACTAAACAGCTGTGTGATCTTGGTCTAGTGCCTTAACCTCTCTGAGCCTCAGTTTGTACATCAGTAACATTGGGATA
ATGACATCCACATGCCCACTTCACAGAGCTGCTGTGAGGACTGGATGAGAAATGTAGAGAAGTATTTCGGACACCATAAAGCTCAAATACAAGGTGTTGG
TTAGGAAAAGTTTCAACTGACTTGTACCCACCTGATACCCCTCCATCAGCATAAGCGTGTATGAGGATGTTAGGTACATGTGTTGTGAGTGAAAGCTCTG
GAACACCCGAGTAGAGCTTTCTGCAAATCAGCTTCTCCTTCAGAGGAGACCATTTTGTTTTGCTTTCCAGCAGTTACTTGAAGAAGCCTTATCTGAAGTC
ACAACAGTGACTTCAGGAATAGAAGGGACCAATGGCCAGCTTGCTGAAATGTAATGCCATTCTTAAAAGCCAGCTAAGAATCAGACCGTATTAGTTAAGG
ACCCATAAGAGTAGACATTTAGAAAAAGTGAAAAATGGCAAGAGTGGCCCAATCTTTTGAGAGTTTAGAGAAAATATCATTTGGAAAGGGAGTAGCTCTC
CTTCTATTTTAGCCTTATTATTACGGTATCTATAAAGCAATGCCATATTCTAAATCTGCAGAAATAAAATTCTAAGGGGCGAAAGTCCAAGGCAGAAGTC
AAAAGTTTTGCAAGGAAACCGATGAGGTTGCTGACCTGAGCTGGGCAGGGTTGAACAGGCGAGTGCCAAGATCAAGGTCTCTGATTGTCTCTCCTTGAAA
GGTAAGCAGAGAACTAGGGCTATCCCATAAATTAAGTGGGAGATTGGAAAGGGGTGCGGACTTCTGTATTGGGGAGAAGGTCTTGGATGAACTGGGGCAG
AGAACTGCCAGAGAGAGTACCTAGGAATACGTTGTTAGCAGGAGAAAGACCAAGTTCAGATGCAGACTTGGGAAAGTAGGTAACTTGACCAAAGGTAGCA
AAATTAGACTACCCAACTGGATTGTGAATGCAGTTTATGAAATGGATCAGGACAGGAGCAAAAATAGATTTTCTAGAAACTGCAGACTCCTGTGATTGGA
GCAGTATACAAAGTACAGCAACATCAGACTAGATCTCACCTGAGGTGCTGGGTGAGAAATCTTAGGGACCAGATGGAAGAGGGCCTGTGTATAAAGACAT
TAGGAAGGAGGTTTGGGAGGGCAGCCTGACTTGTCTCCAGAGAAAGTTAGAACTGGTTGACTTAGCAACCAAGGGACACTGGGTCAAAGACGAGGAATCA
GGACGTCGGTGCCTAGTGACTGAGCGCCAGCCCAGCCCATTTCTCTACATTGCCATGGGCTAAACCCAGTGTGCTGTAAACTCTTCAGTTCCTTTGGTTA
TGGATTTTGTATCTTTTCTGTGTTTCTTAATAAAGTTCTTTTGAAAAATGGGAACCTTTCTCAGATGGGAATTTTGTATCTTTCCTCTGTTTCTTAATAA
AGTTCTTTTGAAAAATTGGAA

Expression



Full and truncated open reading frames discovered in TCONS_00240688

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.