Detailed information on ENST00000565600

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000565600 533 282 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000565600 533 282 UTR3 Trans

Sequence

>TCONS_00153158 (1655 nt)
ACTTGAGCCCAGGAGTTTGAAGCTGCAGTGACCCCAGATTGCACCACTGTCCTCCAGCCTGGGCAATAGAGCAAGACCCTTTCTCAAAAATGAAAAAGAA
CATTCTGGAGAGACAGAGAAGCAAGAGGGACCAGAAAGGAGATGGGCTCTTGCTATGTTGCCCAGGCTGGTCTCAAGCTCCTGGCCTCAAGAGATCCTCC
TGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCTACCACACTGGCCCCTGCCTCATACTTTTAATTAACATAAGTCTCTCTCTCTTCAGACCA
TTTAGCCCCCATTTTGGTTGGAAAATATCAGTGAGGTGAGGCTTGGGTAACAAAAATGTCAAGCCTCTGAGAGGAGTCCAGGGTATAAAAACAGGCGTGG
GCCTGTTTCCAAAACCCTGACCATCCTCATGTCTGTCCCTCTTTCCTGCTGCTGAGGGTGGGAGGAGCCTGGAGCAGAGTGTGACAAGATGTCATCAGGC
TCTGGAGTCCAGGTGACTTTCTGAGATTCTCTAGTTTGACTCATCCACAGATGACAAAAGTAAGGCTTAAAGAAAAGAGATTTCATGACCAAAGTCGCAT
GACCAATGTATGTGTGGGTGAGCATGTAGTGGCCAGGGTGGTGGAAGAATAGATAGAAATCCCTGGGCTGGGCGAGGTGGCTCATGCCTGTAATCCCAGC
ACTTTGGGAGACCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTTGGGAGCAGCCTGGCCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAATT
AGCCGGGCGTGGTGCCGCACGCCTATGACCCCAACTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGTGCAGTGAGCCGAGATCGTGCCATTC
CACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAATAAATAAATTAAATAAATAAATGAATGAAAAGACAGTCTCCGTCAGACTGCCCCATCCTG
GTGGTTTTGAGCCCTGCTGGGAGGAGCTGGAGATGGAGAGTCCGGGGGAAACCGCCTTTGCAAAGAAAGAGATCTAACTTAACTGACTCCACCTTGCTTC
TAACCTCCAAGCTGTCTTTGTTTATTCCTGGGCGTAGGCTGAACTAACTTTGGGAGAAACTTAGTTTGTAGTTTATAGTTTAAACAAAGACAGTAACAGC
CCTTTCCCAAAGCAGACCTTCTTGCCTGGGGACTAGACTAACACTAGCCATAGGATTAGAAATTATGGTTTAGGAGTCATGCAGCTGGAGGCTACAAGAT
TCTGACCCTCCCTAAACTGCTCCTAACATCAGTGCTTGAGATATTTTGCAGACCCTGCACTTGATGGATCAGCTGGCACCACCCAGATCAATAAACTGGC
TCATCTGATCTTGTGGCCCCCACCCAGAACTGACTCTGCAAGAAGACAGCTCTGACTCCTGATGATTTCATCTCTGACCAATCTGCACTCCCAGATCCCA
GCACTTTGGGAGGACCAGACAGGCAGATCACAAGGTCAGGATGAGAGGTGACAGCGTGCTGGCAGCCCTCACTCACTCTGGGCGCCTCCTCGGCCTCCAC
GCCAACTCTCCCTGCGCTTGAGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGAGCC

Expression



Full and truncated open reading frames discovered in TCONS_00153158

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.