Detailed information on ENST00000565600

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000565600 533 282 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000565600 533 282 UTR3 Trans

Sequence

>ENST00000565600 (1656 nt)
ACTTGAGCCCAGGAGTTTGAAGCTGCAGTGACCCCAGATTGCACCACTGTCCTCCAGCCTGGGCAATAGAGCAAGACCCTTTCTCAAAAATGAAAAAGAA<br />CATTCTGGAGAGACAGAGAAGCAAGAGGGACCAGAAAGGAGATGGGCTCTTGCTATGTTGCCCAGGCTGGTCTCAAGCTCCTGGCCTCAAGAGATCCTCC<br />TGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCTACCACACTGGCCCCTGCCTCATACTTTTAATTAACATAAGTCTCTCTCTCTTCAGACCA<br />TTTAGCCCCCATTTTGGTTGGAAAATATCAGTGAGGTGAGGCTTGGGTAACAAAAATGTCAAGCCTCTGAGAGGAGTCCAGGGTATAAAAACAGGCGTGG<br />GCCTGTTTCCAAAACCCTGACCATCCTCATGTCTGTCCCTCTTTCCTGCTGCTGAGGGTGGGAGGAGCCTGGAGCAGAGTGTGACAAGATGTCATCAGGC<br />TCTGGAGTCCAGGTGACTTTCTGAGATTCTCTAGTTTGACTCATCCACAGATGACAAAAGTAAGGCTTAAAGAAAAGAGATTTCATGACCAAAGTCGCAT<br />GACCAATGTATGTGTGGGTGAGCATGTAGTGGCCAGGGTGGTGGAAGAATAGATAGAAATCCCTGGGCTGGGCGAGGTGGCTCATGCCTGTAATCCCAGC<br />ACTTTGGGAGACCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTTGGGAGCAGCCTGGCCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAATT<br />AGCCGGGCGTGGTGCCGCACGCCTATGACCCCAACTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGTGCAGTGAGCCGAGATCGTGCCATTC<br />CACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAATAAATAAATTAAATAAATAAATGAATGAAAAGACAGTCTCCGTCAGACTGCCCCATCCTG<br />GTGGTTTTGAGCCCTGCTGGGAGGAGCTGGAGATGGAGAGTCCGGGGGAAACCGCCTTTGCAAAGAAAGAGATCTAACTTAACTGACTCCACCTTGCTTC<br />TAACCTCCAAGCTGTCTTTGTTTATTCCTGGGCGTAGGCTGAACTAACTTTGGGAGAAACTTAGTTTGTAGTTTATAGTTTAAACAAAGACAGTAACAGC<br />CCTTTCCCAAAGCAGACCTTCTTGCCTGGGGACTAGACTAACACTAGCCATAGGATTAGAAATTATGGTTTAGGAGTCATGCAGCTGGAGGCTACAAGAT<br />TCTGACCCTCCCTAAACTGCTCCTAACATCAGTGCTTGAGATATTTTGCAGACCCTGCACTTGATGGATCAGCTGGCACCACCCAGATCAATAAACTGGC<br />TCATCTGATCTTGTGGCCCCCACCCAGAACTGACTCTGCAAGAAGACAGCTCTGACTCCTGATGATTTCATCTCTGACCAATCTGCACTCCCAGATCCCA<br />GCACTTTGGGAGGACCAGACAGGCAGATCACAAGGTCAGGATGAGAGGTGACAGCGTGCTGGCAGCCCTCACTCACTCTGGGCGCCTCCTCGGCCTCCAC<br />GCCAACTCTCCCTGCGCTTGAGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGAGCC

Expression



Full and truncated open reading frames discovered in ENST00000565600

In silico ORF/peptide predictions
>peptide 1 (87 aa)
MPVIPALWETEAGGSPEVRSLGAAWPTWQNPVSTKNTKISRAWCRTPMTPTTQEAEAGESLEPGAVSRDRAIPLQPGQQSETLSQNK

>peptide 2 (65 aa)
MGSCYVAQAGLKLLASRDPPASASQSAGITGVSYHTGPCLILLINISLSLFRPFSPHFGWKISVR

>peptide 3 (61 aa)
MKKNILERQRSKRDQKGDGLLLCCPGWSQAPGLKRSSCLSLPKCWDYRCELPHWPLPHTFN

>peptide 4 (60 aa)
MKRQSPSDCPILVVLSPAGRSWRWRVRGKPPLQRKRSNLTDSTLLLTSKLSLFIPGRRLN


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT141625 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 2.0E-19)