Detailed information on ENST00000565709

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000565709 509 304 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000565709 509 304 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000565709 604 292 noncoding Trans

Sequence

>TCONS_00216910 (787 nt)
AGGCATGAGCCAGCACGCCCGGCCCTAATTTTTTTTTGTTTTGTTTTGTTTTTAAAGAGACAGGATATTCTCTGTCGCCCATACTGGAGTGCACTAGTGA
TCACGACTCACTGCAGCCTTGAATCCCTGGGCTCAGGTGATCCTCTCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGTGCACACACATCCTGGCTA
ATTTTGTATTATTTATTTATTTATTTTTGAGATGGAGTCTGTCTCTGCCACCCAGGCTGGACTACAGTGGCGTGACCTTGGCTCACTGCAACCTCCGCCT
CCCAAGTTCAAGCACTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGAGCATTACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGAAGGG
GTTTCACCATGTTGGTCAGGCTGATCTCGAACTCCTGACCTCAGGTGATCCACCCTCCTTGGCCTCCCAAAGTGCCGGGATTGCAGGTGTGAGCCACCGC
GCCCAGCGACTTAACGTGTCATTTTCACTCAACTATATTATGAAGAATATTTCCACGACGCAGGAGGCTGAGGCAGGAGAATGGCACGAACCCAGGAGGT
GGAGGTTAGTATTTTGTGACATGTGAAAATTATGTGAAACTCAAATTTCAGTGTCCATAAAATTTTTTTTGTTGTTTTTGAGACAGAGTCTCACTCTGTC
ACCCAGGCTGGGGTACAATGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCCAAGTTCAAGCGATTCTCCTGCCTCAACCTCCCAG

Expression



Full and truncated open reading frames discovered in TCONS_00216910

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.