Detailed information on ENST00000566424

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000424496 sense_intronic sense intronic ENST00000566424 528 280 noncoding Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000566424 554 280 UTR5 Trans
TCONS_00075844 forkhead box N3 novel protein coding ENST00000566424 515 278 UTR3 Trans
TCONS_00075845 forkhead box N3 novel protein coding ENST00000566424 515 278 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000566424 567 282 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000566424 530 279 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000566424 561 278 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000566424 543 268 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, mem... novel protein coding ENST00000566424 612 279 UTR3 Trans

Sequence

>ENST00000566424 (1140 nt)
CAGAGTCTTACTCTGTCGCTCAGGCTGGAGTGTAGTGGCGCGATCTCAGCTCACTGCAACCTCTGCCTCCTGGTTTCAAGCAATTCTCCTTCCTCAGCCT<br />CCAGAGTAGCTGGGATTACACGCGCCTGCCACCGCGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCAACCATGTTGGCCAGGCTGGTCTCA<br />AACTCCTGACCTCAGGTGATCCTGCCCACCTAAGCCTCCCAAAATGCTGGTATTACAGGCATGAGCCACCGTGCCCGGCCTAAATATTTAATAAAATAAT<br />GGACGATGGGTGCCTTCTACTGAGCTCCCGGTAATTGTGAGTGAGTAGAGGACTTGCCCTGGGGACATTCAGTGACCTGCTGGGTGTTGCTGAGCTGTGA<br />GGAAGTTCAGGTCTGGCTGCAGTGGTGAGGCTGTGACTCAATCAATCACTGCTGATGCTCCCAGGACCTGCACCAGCTTAGTCCTAGGGGCAAGGATTTT<br />AACTGTCCACCTCAGTTTCTTCATTTGTAAGATGCAAATAACAGTCACCCCTGCCTCATGGGATGGAGCTGTGTAATGCCCGCAACAGTGCCTGCTGCAT<br />AGAGGGGTTGCTGCCAGCTGCCTCTCCCTCCTTGTCTCTTACCTGCCTGCTGCCTGGGTCAGGATGAAGAGGGGCCCTTGTGTTGCCCCCACCCTGGCTG<br />CCTGCTAAGGGCCCATGTGATCTGCCTGGCAGAGGAGTTTCTTCAGGAAGAACCAGGGCAGCTTCTGCCCCTAGAGGGCCAATGCCCTTGGTGAGTGCAG<br />TCCCCTGGCCCCAGCCTGGTCCACCTCTGGGAAGAGGGTGCCCAGTTGTGCAATCCAGGCCCAGGCAGCTGAGCCCTCATCTCAGCATCCAGGGCGGATA<br />CTGGAGGGGGCTTGTGGCATCTGACTCTGTATCTCCTACCTGCCCCTCTCCTTGGTAGCTGTGAGAAGTCACTGCTTTGGGGAGACCTGATCTGGCTGTG<br />CCAGATGGACACTGAGAAAGAAGTAGAAGACTCAGAATTAGAAGAGGCACACTGGACAGACCTGCTGGAGACCTGATCCTCAGTGTCCTTACCCCCTCCT<br />ACCTCTTTTCTGTGCCACCTGCTGTGGGTCCAGCAGGTTT

Expression



Full and truncated open reading frames discovered in ENST00000566424

In silico ORF/peptide predictions
>peptide 1 (72 aa)
QSLTLSLRLECSGAISAHCNLCLLVSSNSPSSASRVAGITRACHRAWLIFVFLVEMGFQPCWPGWSQTPDLR

>peptide 2 (58 aa)
MPLVSAVPWPQPGPPLGRGCPVVQSRPRQLSPHLSIQGGYWRGLVASDSVSPTCPSPW


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT141602 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9BQ83|SLX1_HUMAN (Evalue: 2.0E-15)