Detailed information on ENST00000566639

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000566639 502 300 UTR3 Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000566639 512 278 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000566639 502 300 UTR3 Trans

Sequence

>TCONS_00153158 (715 nt)
GCATGGTGGCTCACGCCTATAATCCCAGCACTTTCAGAGGCCAAGGCAGGTGGGTCACAAGGTCAAGAGTTTGAGACTAGCCTTAGCAACATGGTGAAGG
TGAACCCCGACTCTACTAAAAATACAAAAATTAGCTGGGCCTGGTGGTGTGCACCTGTAATCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATCGCTTGA
ACCCGGGAGACATAGGTTGCAGTGAGCCGAGACTGCACCACTGCACTCCAGCCTAGGTGACAGAGTGAGACTCCATCTTAAAAAATAAATAAATAAAATA
AAATAAATGACATCACTTTGGTTCAGAGCTCTAAAATGGAGGGAGGAAGCCATTCTAAAAAGGACTCCCTACATGACCTGCAACTTGAAAAAAAATTAAA
AGCTCCAAAAAAAAAACAATACAGGAGCTTACCTTGAACCTTTGAATTGGGCCAAATTGCGATGACCACTGCATCCTGGAAAATTTTATTTCACCAGCAC
TACAACTCCTCAACAGCACCAACCAATAAACTATGGATTTTTGTACTAAGCCAGTTGCCTCTTTCAAAACAACTTGTCAACTTGTCTAATCACCCTCAGC
TTTTTTTAAAAACCCCTCCTCTACCCTCTCTCTTCAGAACACAAGTGGCTTCTAGCTGAATCTGTCTCCCAAATTGCAATTCCTAAGACCTCAATAAAAA
CACCTTGTCTTGCTGC

Expression



Full and truncated open reading frames discovered in TCONS_00153158

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.