Detailed information on ENST00000566677

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262134 lysophosphatidylcholine acyltransferase ... protein coding ENST00000566677 537 309 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000566677 560 301 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding ENST00000566677 515 301 CDS Trans
TCONS_00078200 GTP cyclohydrolase I feedback regulator novel protein coding ENST00000566677 522 306 UTR3 Trans
TCONS_00090805 lysophosphatidylcholine acyltransferase ... novel protein coding ENST00000566677 537 309 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (... novel protein coding ENST00000566677 606 307 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (... novel protein coding ENST00000566677 606 307 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000566677 626 299 UTR3 Trans
TCONS_00224726 caldesmon 1 novel protein coding ENST00000566677 536 303 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding ENST00000566677 536 303 UTR3 Trans

Sequence

>ENST00000566677 (5843 nt)
AAGAGGTTGAAACTAACGGCTATAATGAAGTTTTGGGTTCTCTAAAGATTTCATTTATCGGTGCTATTGGTCTCCCCATTAAATGCATGCCTGTTCTGTG<br />TACCTTTGCACACAGTTTGCATAACATATAATATTTATTACTGAAACCTTGCAAACTTCTTAAATTGTATAGAAAAGGCTGTGAAACTTACTCTTAGAGA<br />ACATAAAAATATAGAGAATGAAGGTCATAACTCCAAATATTGAGTGATACAGTGTTTTGAAAAAAAAAAAACCAGAATAAAACAAAATTAGTTACTAGAG<br />TAGAAAAAATATAGTTTTAATATGTATTGATACATGTCTTTTTGCCCTCCCCCAATTTAGTAAAGATGCACTAGGTGTTAATAATATTCTTCTTATCATA<br />CAGTGTATTTTAATCTAGCATTTTAGAAAACTTTTTACAAGTTCATAGATAAAAGCCCTGTCAGAATGTGACTTTTCATTTTCAGATGTTGTGAACTGGA<br />TTTCTGCATGATTTTTATGGAAATGACTATACTTTTAAAATGTAAAACTTTTAATAAAACAAAACAAATTTAAAGCCCTCAAACCTTTTCTTGGTGGACC<br />TCATGTCCCCCTGTGATTCTTAAGTATATGTTAACTAGTTTCAGATGTGTTTTGTTCGCTGACTCAAAATCAGCTCTTTATTTTAAGAAAAGAAATTGTG<br />TAATTAGTACTTAATTGCTTTGGATATTTTGGGCATTTGGAGAAGAGGGTAATTCAAAGGCCAGAGAAATTAAACTTTCAGAATGTTCTTTATGCGTCTG<br />TAATTTCTTTTTAAAAAATGCCCTCTAAAGACAGTCCTGACAACTTAAAAATGAATGAAGACCTGGGTTGTTTTTAAAAATTAACATCATCTTTGGATGT<br />GGTTTTATTGATTTATTTAAGATAAATTGGAGAGAGGACCATTGAAGTGCTAGAAAACAAGATACTATCTAGTTCATCTCCTTTTCAGGCAGGTGTTGTC<br />TAAATAGCTCACAGATGGCAGTCTTCTTCTCTTACATTTCAAGATCTTCCAAGATGAAAATAAATTTTTCCCCACTTTAAAAATATTACATTTGATCAAA<br />TTTAAATATTTGCATAATTAAGAATGGTATATGGTCTGCTGGGACCAACTGCAACTTGGTTGACATGGGCACATATCCTGTATCTGCAGTGATTTGAGAG<br />GTCTAGGTCTTGTTTGGTCATTTAACTTCTCTAGGCCAGTTATATTGTGTATAAATTGGAATGTTGGACTAGTAATCTCTACAATTTTGCTAGTTCAGAA<br />AAGTTTCTGAGGCAACCATTATCTAAAAATCTATGTTTTGTGAATCTGAAGGTTAACAGGTCTGCTTTTAAGTGATAATATTCCTATATTAATTTTGATA<br />ATGAGCACTTGAACTATGACATTAATGAACTTAATGGTTATAAAATATATTGGGTTTTTAAATATATACCTTAAACCAGAAGACCCTTACTTTGTATCTA<br />CTGTAGTTGCTGAATAAGACACATAGGAAGGATTTGAAGATTGGTTTCATATTGATTCCCAACCATTTGTGGAAGTCATACTAAAAGTACTATTTCAGAT<br />TATTGCCATTACCTTTTTTTCATTCTAACTAATATTATTTTTACTTTGTTCTTAATCTTTATCATTTTTTTCTTGAAGAAAACATCTTATATTACTGTTG<br />AAGAAACAGTGAAACTTGAAGAAACAGTTTATGTTACTTAAACATCTAGTTTCCACTTAGAAAATTCAAAGAATCATAAGTAACTACTTGGCTCAAACAT<br />ATGCAGTTTTATAAGAGCCTGTATGAAATGTGTGATTCTCAAGGAAAACATAAATTGTAAAACTGACTATAAAAGAGATATATATATCAACAGATCAGTA<br />GCCAAAGAAAAAACAGTTGCCCACCCAACAATGGCACCAGGCACAGATTGGGTTTTGTGGAGGAATTCTACTAAAATGTTAAGGAGTGGATAGGTCCAGT<br />GTTATTTAAAATACTTGAGGCCAGGCATGGTGGCTCATGCCTGTAATCCCACCACTTTGGGAGGCCGAGGCAGGCAGATTATTTGAGGTCAGGAGTTTAA<br />GACCAGCTTGGCCAACATGGGGAAACCTTGTCTCTACTAAAAATACAAAAATTAGTCAGGCATAGTGGCATGCACCTGTAATCCCAGCTACTTGAAAGGC<br />TGAGGCAGAAGAATCACTTGAACCCAAGAGACGAAGGTTGCAGTGAGACGAGATCGCGCCACTGCACTCCCACATGGGCGACAGAGCAAGACTTCATCTC<br />AAAAAAAAAAACAAAAAAAAAGGTTGACTTCAAAGAAAAATTTTCCCATCAGTATTAAGGAAAGAGATGCTGTCTTTTTTACAAAATTGAGATGAACCTC<br />AGATGAACATGTAGAACAGACAGTTGGGACCAAGGATGAAAGATAACAGTGAGAGTTCTCCAATAAAACCTTGAACTTTGAGCCTAGTTGGTGCCTTTGT<br />GCCTTGTTGATAATTAGGGAATTAAATTAAGAAAGGAAATTATTGTCAGTCTGGATAGGCTTTGTAAAGACATGGATACTGTTAAACGTGTACTTGTATT<br />TTACTCATTCATCTTTTGGGGGCATTAAGTGTCCTGGGGCCTAGAACAGTGAACAAGGCCACCTGTTTCGAAATGCTGCTTCCTACCCTGGTACCATCAT<br />TTCATCTGAACTTTGCCAAGTTGTTACCTCGTCCTTTCTTAGATCTAGGATGAAGGAAGCAAGCCAAAGGTTGAAACAGAGGAGATGGGACAGTCAGAGT<br />TTAGTAAATAGATTAAAGGAAGAAGATACCCAATACACAGCATTTTACATGTTTGGCATAACATCTTTACTATAAAAACTAGAAGTCTAATATCACCAAT<br />GGTGACAAAGACTTCCAGATGCTATCCTTTGGCTACAATTATTACTGAATCAGCTTCATGTTGAGAGAGAAAGAGTGAGAGGGAGGGAGAAAGAGAGACA<br />GGGGTGTGTGTATGTGAGAGAGAGAAAGAGAGAGAGCGAGCCAGTTGTAGTTTGTTGAAGTTCACCACAAAAAGATGGGAAGGATCCCCAGCCACACTTG<br />ATGTTTTGTGTTTAAGTTTTGAGGTTTGGGATTGTTAATTCTCATATTAAGTCACCCATGCAATTTAAATTGTAGATATTATGTTAGTAATTTTGGTGCA<br />GTGAACAGGAGTGCAGCATCTGTCTTTTAAAGGGATTTTTATGTGCATTTGGATTGCTTGGTGACCTTTGAAATTTTGTTTTGCACTGTTATCAGAAACG<br />TAATCATTTTTCTTTCTGAAGCAGATTTTAACATCTGAAAAGGTTGATGAAGCTAGGATAGTTTTAGTGAAATATTAATCTATCTTTTTCAATGTCACCA<br />TTGCTTTTAAAACTGTTCATCAGCTACCGGAAACATCAGCTTAAGGCACTGGAGTTGATTTTAATTAAATATTCTCATTGTGGTCAGAGTATAGTTACAG<br />AACAGAAACTTGTCCAATCTTCTTCATCTACAGCTCACTTTCCAAATTCTCTTGTTTTTAAAGTCATATTATTTCAATCTGTATTTCTTTATCTCAATAG<br />TTAACTTGAGATTTTTTATATTTCAAGGAGGGGAGATTGTTCTGAATACTGGCACCAATCCTTCAAAATCTAGACAGCTTAAGGATATTGACTTTTAACA<br />AAATTTAACTTAAATGTCTACTTTAAATATGTGTCTTGTCATTAAAAGGTTATTTACATTTGAAATGCTGACCTTTCAAGTTGTGCACAAGAGTGTTCTA<br />AAACAGAGTTTCTGAACATTGGCCATGAAACCACTGTCTTGGGCTGACAAATGGATTGGAAATAAGCTACCCAACACTGGGAATGGGCCATTAATTTTAA<br />TCAAAGGTGATGCAGGAAGGCGAATGGGATGCATGACAATGTCAACAGCCCAGTAGGTGTTAAGAGACCACACAGCCTTCCTTGTTACTTGGTCGGGCCA<br />TTAGTTGAGGTTGGGTGAAGACAGAAAGCCATGTCTGGAATTGAATGACCAGGTCACTCCAAAATCTAATGGAGAACTCCCCATTTCAGAAATCACATTG<br />TACTGCCATTAGAAGTCAAGGACAGCATTTAGAAAATATTGGTGGATTTTTTTTTTTTTTTTTTTTTTTTAAACAATCACCTTTCTAGTTTTTCCCAACT<br />TTGTCAAGCTTCCTGTTTTCCTGCCTTCTTTCCTTCCTAATAGATCATTGATATTTACAGGGGACTAAGAAATCAAACAGACTTAGGAAAAAAAATCTTA<br />AAGCCTTAAAATTGCTTTTCAGAATTACATATTGTTATAAAACTCAGGTAAATGTCAGAAACAATAGCATACCAAAGGAATTAAGCAGGATAACTAATTC<br />TTTATGGCGATCTCATTGTCCTTGTCTCTTTCTTGTGTGTGGGAATAGTTTCACTAATTGAAACTAAACTTTCGTAATTGCTTTATTGAAGGCATTTTTT<br />CATAACTGTGAAGGCCACTGTGCTTGCCCCTTTACTATAAATTTTCAATACTGGCTGATAACATTTGTAATTTTCACAGTGGTGAAAGCCTTTATTTTAA<br />ATCAGTAAGTATATTACCTTATTTTGAGTACTTTCAATTACAAAAAAGGTAGTATATGACAGCTTGAACTCGTGATGTTTATAATAACGAAAACATGCAG<br />AAAAATAATGAAAGAAGCATATCTGAAGCATATTTACGCTTCAGTGTTGTTCAGAAAGTTCATTATTTCTGACACAGCACTGCATGCATAAGAAAGATAT<br />GTATGACTACAGTAGTAATTTTTATACATATTTAAGAAATAAAAACAAATATATTCCTATCTTGTTAATTGAATAGTGTTTTAAGTAAATAGTGTTTGTT<br />CTTCCTGTAGATGAAGATCAGCTTCGTGCAAAGGGTTATGACAAAACACCAGACTTCATTTTACAAGTACCAGTTGCTGTAGAAGGGCACATAATTCACT<br />GGATTGAAAGCAAAGCCTCATTTGGTGATGAATGTAGCCACCACGCCTACCTGCATGACCAGTTCTGGAGCTACTGGAATAGATTTGGGCCAGGCTTAGT<br />CATCTATTGGTATGGATTTATCCAGGAGCTGGACTGCAACCGGGAAAGGGGCATCCTGCTCAAAGCCTGTTTCCCCACGAACATTGTCACCTTATGCCAC<br />AGCATAGCTTGACCCTGAAGATCCTGGAAGAGAAGCTGGGAGGAAAAGAGACCCAGCATTGCATTACCATCGTGGAATAATCTAGCGCAAACCTAGGAAA<br />GCTGAAGCCACAAAGTCCAAAGCCACCTTTGTACTCACCTGCAGAGCTCCAGAAGACCTTGATGGCAGCCTGCCTATGCTGTGTGTTTGCTATATTCAAT<br />CTTTACGGCTTCCTGACTTCTGTGACAGTAAGCCAAGTGCAAAAATACACTTGATGAGAATTTCCTCTTTTAATAATGTTATTTGAACACCACATATTTT<br />AGATTTATCTTATTTGAAAGTATTAGTTCCATTGTGCCTGGAAACCACACTCCTTTAGATTGGGGGCCGAGAGGCGACAACCCAACATTGAGGAGAGTTT<br />ATTTTTAAACATGGCTAGTTGTCAGTATGTACGTGAGCTAGTATTTTTATGAGTCGAGTTTTTTAAAGGCACATTCTGTATACTGCTTAGTATATGCATT<br />TTATACCATGTAATTATAAAACACTCGAGTAAGTTCAGCATTAGAAATGTTTAGCTTTGTATGAACTGAGTGTGCCAGAAATAAACCTGGAGCAATTTTT<br />AAATAAGCAAAATAAAGGAGATTTTTCTATTTGTTCACTTTAA

Expression



Full and truncated open reading frames discovered in ENST00000566677

In silico ORF/peptide predictions
>peptide 1 (70 aa)
MSPLLLKLFISYRKHQLKALELILIKYSHCGQSIVTEQKLVQSSSSTAHFPNSLVFKVILFQSVFLYLNS

>peptide 2 (56 aa)
MKCVILKENINCKTDYKRDIYINRSVAKEKTVAHPTMAPGTDWVLWRNSTKMLRSG


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT041662 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9Y2V0|CO041_HUMAN (Evalue: 9.0E-63)