Detailed information on ENST00000566677

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000262134 lysophosphatidylcholine acyltransferase 2 protein coding ENST00000566677 537 309 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000566677 560 301 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000566677 515 301 CDS Trans
TCONS_00078200 GTP cyclohydrolase I feedback regulator novel protein coding ENST00000566677 522 306 UTR3 Trans
TCONS_00090805 lysophosphatidylcholine acyltransferase 2 novel protein coding ENST00000566677 537 309 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000566677 606 307 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000566677 606 307 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000566677 626 299 UTR3 Trans
TCONS_00224726 caldesmon 1 novel protein coding ENST00000566677 536 303 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding ENST00000566677 536 303 UTR3 Trans

Sequence

>TCONS_00224728 (5842 nt)
AAGAGGTTGAAACTAACGGCTATAATGAAGTTTTGGGTTCTCTAAAGATTTCATTTATCGGTGCTATTGGTCTCCCCATTAAATGCATGCCTGTTCTGTG
TACCTTTGCACACAGTTTGCATAACATATAATATTTATTACTGAAACCTTGCAAACTTCTTAAATTGTATAGAAAAGGCTGTGAAACTTACTCTTAGAGA
ACATAAAAATATAGAGAATGAAGGTCATAACTCCAAATATTGAGTGATACAGTGTTTTGAAAAAAAAAAAACCAGAATAAAACAAAATTAGTTACTAGAG
TAGAAAAAATATAGTTTTAATATGTATTGATACATGTCTTTTTGCCCTCCCCCAATTTAGTAAAGATGCACTAGGTGTTAATAATATTCTTCTTATCATA
CAGTGTATTTTAATCTAGCATTTTAGAAAACTTTTTACAAGTTCATAGATAAAAGCCCTGTCAGAATGTGACTTTTCATTTTCAGATGTTGTGAACTGGA
TTTCTGCATGATTTTTATGGAAATGACTATACTTTTAAAATGTAAAACTTTTAATAAAACAAAACAAATTTAAAGCCCTCAAACCTTTTCTTGGTGGACC
TCATGTCCCCCTGTGATTCTTAAGTATATGTTAACTAGTTTCAGATGTGTTTTGTTCGCTGACTCAAAATCAGCTCTTTATTTTAAGAAAAGAAATTGTG
TAATTAGTACTTAATTGCTTTGGATATTTTGGGCATTTGGAGAAGAGGGTAATTCAAAGGCCAGAGAAATTAAACTTTCAGAATGTTCTTTATGCGTCTG
TAATTTCTTTTTAAAAAATGCCCTCTAAAGACAGTCCTGACAACTTAAAAATGAATGAAGACCTGGGTTGTTTTTAAAAATTAACATCATCTTTGGATGT
GGTTTTATTGATTTATTTAAGATAAATTGGAGAGAGGACCATTGAAGTGCTAGAAAACAAGATACTATCTAGTTCATCTCCTTTTCAGGCAGGTGTTGTC
TAAATAGCTCACAGATGGCAGTCTTCTTCTCTTACATTTCAAGATCTTCCAAGATGAAAATAAATTTTTCCCCACTTTAAAAATATTACATTTGATCAAA
TTTAAATATTTGCATAATTAAGAATGGTATATGGTCTGCTGGGACCAACTGCAACTTGGTTGACATGGGCACATATCCTGTATCTGCAGTGATTTGAGAG
GTCTAGGTCTTGTTTGGTCATTTAACTTCTCTAGGCCAGTTATATTGTGTATAAATTGGAATGTTGGACTAGTAATCTCTACAATTTTGCTAGTTCAGAA
AAGTTTCTGAGGCAACCATTATCTAAAAATCTATGTTTTGTGAATCTGAAGGTTAACAGGTCTGCTTTTAAGTGATAATATTCCTATATTAATTTTGATA
ATGAGCACTTGAACTATGACATTAATGAACTTAATGGTTATAAAATATATTGGGTTTTTAAATATATACCTTAAACCAGAAGACCCTTACTTTGTATCTA
CTGTAGTTGCTGAATAAGACACATAGGAAGGATTTGAAGATTGGTTTCATATTGATTCCCAACCATTTGTGGAAGTCATACTAAAAGTACTATTTCAGAT
TATTGCCATTACCTTTTTTTCATTCTAACTAATATTATTTTTACTTTGTTCTTAATCTTTATCATTTTTTTCTTGAAGAAAACATCTTATATTACTGTTG
AAGAAACAGTGAAACTTGAAGAAACAGTTTATGTTACTTAAACATCTAGTTTCCACTTAGAAAATTCAAAGAATCATAAGTAACTACTTGGCTCAAACAT
ATGCAGTTTTATAAGAGCCTGTATGAAATGTGTGATTCTCAAGGAAAACATAAATTGTAAAACTGACTATAAAAGAGATATATATATCAACAGATCAGTA
GCCAAAGAAAAAACAGTTGCCCACCCAACAATGGCACCAGGCACAGATTGGGTTTTGTGGAGGAATTCTACTAAAATGTTAAGGAGTGGATAGGTCCAGT
GTTATTTAAAATACTTGAGGCCAGGCATGGTGGCTCATGCCTGTAATCCCACCACTTTGGGAGGCCGAGGCAGGCAGATTATTTGAGGTCAGGAGTTTAA
GACCAGCTTGGCCAACATGGGGAAACCTTGTCTCTACTAAAAATACAAAAATTAGTCAGGCATAGTGGCATGCACCTGTAATCCCAGCTACTTGAAAGGC
TGAGGCAGAAGAATCACTTGAACCCAAGAGACGAAGGTTGCAGTGAGACGAGATCGCGCCACTGCACTCCCACATGGGCGACAGAGCAAGACTTCATCTC
AAAAAAAAAAACAAAAAAAAAGGTTGACTTCAAAGAAAAATTTTCCCATCAGTATTAAGGAAAGAGATGCTGTCTTTTTTACAAAATTGAGATGAACCTC
AGATGAACATGTAGAACAGACAGTTGGGACCAAGGATGAAAGATAACAGTGAGAGTTCTCCAATAAAACCTTGAACTTTGAGCCTAGTTGGTGCCTTTGT
GCCTTGTTGATAATTAGGGAATTAAATTAAGAAAGGAAATTATTGTCAGTCTGGATAGGCTTTGTAAAGACATGGATACTGTTAAACGTGTACTTGTATT
TTACTCATTCATCTTTTGGGGGCATTAAGTGTCCTGGGGCCTAGAACAGTGAACAAGGCCACCTGTTTCGAAATGCTGCTTCCTACCCTGGTACCATCAT
TTCATCTGAACTTTGCCAAGTTGTTACCTCGTCCTTTCTTAGATCTAGGATGAAGGAAGCAAGCCAAAGGTTGAAACAGAGGAGATGGGACAGTCAGAGT
TTAGTAAATAGATTAAAGGAAGAAGATACCCAATACACAGCATTTTACATGTTTGGCATAACATCTTTACTATAAAAACTAGAAGTCTAATATCACCAAT
GGTGACAAAGACTTCCAGATGCTATCCTTTGGCTACAATTATTACTGAATCAGCTTCATGTTGAGAGAGAAAGAGTGAGAGGGAGGGAGAAAGAGAGACA
GGGGTGTGTGTATGTGAGAGAGAGAAAGAGAGAGAGCGAGCCAGTTGTAGTTTGTTGAAGTTCACCACAAAAAGATGGGAAGGATCCCCAGCCACACTTG
ATGTTTTGTGTTTAAGTTTTGAGGTTTGGGATTGTTAATTCTCATATTAAGTCACCCATGCAATTTAAATTGTAGATATTATGTTAGTAATTTTGGTGCA
GTGAACAGGAGTGCAGCATCTGTCTTTTAAAGGGATTTTTATGTGCATTTGGATTGCTTGGTGACCTTTGAAATTTTGTTTTGCACTGTTATCAGAAACG
TAATCATTTTTCTTTCTGAAGCAGATTTTAACATCTGAAAAGGTTGATGAAGCTAGGATAGTTTTAGTGAAATATTAATCTATCTTTTTCAATGTCACCA
TTGCTTTTAAAACTGTTCATCAGCTACCGGAAACATCAGCTTAAGGCACTGGAGTTGATTTTAATTAAATATTCTCATTGTGGTCAGAGTATAGTTACAG
AACAGAAACTTGTCCAATCTTCTTCATCTACAGCTCACTTTCCAAATTCTCTTGTTTTTAAAGTCATATTATTTCAATCTGTATTTCTTTATCTCAATAG
TTAACTTGAGATTTTTTATATTTCAAGGAGGGGAGATTGTTCTGAATACTGGCACCAATCCTTCAAAATCTAGACAGCTTAAGGATATTGACTTTTAACA
AAATTTAACTTAAATGTCTACTTTAAATATGTGTCTTGTCATTAAAAGGTTATTTACATTTGAAATGCTGACCTTTCAAGTTGTGCACAAGAGTGTTCTA
AAACAGAGTTTCTGAACATTGGCCATGAAACCACTGTCTTGGGCTGACAAATGGATTGGAAATAAGCTACCCAACACTGGGAATGGGCCATTAATTTTAA
TCAAAGGTGATGCAGGAAGGCGAATGGGATGCATGACAATGTCAACAGCCCAGTAGGTGTTAAGAGACCACACAGCCTTCCTTGTTACTTGGTCGGGCCA
TTAGTTGAGGTTGGGTGAAGACAGAAAGCCATGTCTGGAATTGAATGACCAGGTCACTCCAAAATCTAATGGAGAACTCCCCATTTCAGAAATCACATTG
TACTGCCATTAGAAGTCAAGGACAGCATTTAGAAAATATTGGTGGATTTTTTTTTTTTTTTTTTTTTTTTAAACAATCACCTTTCTAGTTTTTCCCAACT
TTGTCAAGCTTCCTGTTTTCCTGCCTTCTTTCCTTCCTAATAGATCATTGATATTTACAGGGGACTAAGAAATCAAACAGACTTAGGAAAAAAAATCTTA
AAGCCTTAAAATTGCTTTTCAGAATTACATATTGTTATAAAACTCAGGTAAATGTCAGAAACAATAGCATACCAAAGGAATTAAGCAGGATAACTAATTC
TTTATGGCGATCTCATTGTCCTTGTCTCTTTCTTGTGTGTGGGAATAGTTTCACTAATTGAAACTAAACTTTCGTAATTGCTTTATTGAAGGCATTTTTT
CATAACTGTGAAGGCCACTGTGCTTGCCCCTTTACTATAAATTTTCAATACTGGCTGATAACATTTGTAATTTTCACAGTGGTGAAAGCCTTTATTTTAA
ATCAGTAAGTATATTACCTTATTTTGAGTACTTTCAATTACAAAAAAGGTAGTATATGACAGCTTGAACTCGTGATGTTTATAATAACGAAAACATGCAG
AAAAATAATGAAAGAAGCATATCTGAAGCATATTTACGCTTCAGTGTTGTTCAGAAAGTTCATTATTTCTGACACAGCACTGCATGCATAAGAAAGATAT
GTATGACTACAGTAGTAATTTTTATACATATTTAAGAAATAAAAACAAATATATTCCTATCTTGTTAATTGAATAGTGTTTTAAGTAAATAGTGTTTGTT
CTTCCTGTAGATGAAGATCAGCTTCGTGCAAAGGGTTATGACAAAACACCAGACTTCATTTTACAAGTACCAGTTGCTGTAGAAGGGCACATAATTCACT
GGATTGAAAGCAAAGCCTCATTTGGTGATGAATGTAGCCACCACGCCTACCTGCATGACCAGTTCTGGAGCTACTGGAATAGATTTGGGCCAGGCTTAGT
CATCTATTGGTATGGATTTATCCAGGAGCTGGACTGCAACCGGGAAAGGGGCATCCTGCTCAAAGCCTGTTTCCCCACGAACATTGTCACCTTATGCCAC
AGCATAGCTTGACCCTGAAGATCCTGGAAGAGAAGCTGGGAGGAAAAGAGACCCAGCATTGCATTACCATCGTGGAATAATCTAGCGCAAACCTAGGAAA
GCTGAAGCCACAAAGTCCAAAGCCACCTTTGTACTCACCTGCAGAGCTCCAGAAGACCTTGATGGCAGCCTGCCTATGCTGTGTGTTTGCTATATTCAAT
CTTTACGGCTTCCTGACTTCTGTGACAGTAAGCCAAGTGCAAAAATACACTTGATGAGAATTTCCTCTTTTAATAATGTTATTTGAACACCACATATTTT
AGATTTATCTTATTTGAAAGTATTAGTTCCATTGTGCCTGGAAACCACACTCCTTTAGATTGGGGGCCGAGAGGCGACAACCCAACATTGAGGAGAGTTT
ATTTTTAAACATGGCTAGTTGTCAGTATGTACGTGAGCTAGTATTTTTATGAGTCGAGTTTTTTAAAGGCACATTCTGTATACTGCTTAGTATATGCATT
TTATACCATGTAATTATAAAACACTCGAGTAAGTTCAGCATTAGAAATGTTTAGCTTTGTATGAACTGAGTGTGCCAGAAATAAACCTGGAGCAATTTTT
AAATAAGCAAAATAAAGGAGATTTTTCTATTTGTTCACTTTAA

Expression



Full and truncated open reading frames discovered in TCONS_00224728

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.