Detailed information on ENST00000566783

lncRNA-RNA interactions

Number of interactions: 94

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000566783 630 278 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000566783 557 272 UTR3 Trans
ENST00000280571 Rab interacting lysosomal protein-like 2 protein coding ENST00000566783 616 280 UTR3 Trans
ENST00000310045 dermatan sulfate epimerase-like protein coding ENST00000566783 628 279 UTR3 Trans
ENST00000399120 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000566783 612 280 UTR5 Trans
ENST00000418314 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein coding ENST00000566783 514 277 CDS Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000566783 618 282 UTR5 Trans
ENST00000448612 WD repeat domain 27 protein coding ENST00000566783 601 286 CDS Trans
ENST00000475187 THO complex 5 retained intron ENST00000566783 569 287 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000566783 638 285 CDS_UTR Trans
ENST00000569455 cadherin 13 processed transcript ENST00000566783 570 289 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000566783 630 285 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000566783 546 283 UTR3 Trans
TCONS_00011358 5-methyltetrahydrofolate-homocysteine methyltransferase novel protein coding ENST00000566783 632 282 UTR5 Trans
TCONS_00011359 5-methyltetrahydrofolate-homocysteine methyltransferase novel protein coding ENST00000566783 632 282 UTR5 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000566783 645 284 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000566783 645 284 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000566783 648 278 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000566783 616 280 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000566783 637 280 UTR3 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000566783 614 282 UTR5 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000566783 655 280 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000566783 638 280 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000566783 655 280 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000566783 638 280 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000566783 638 280 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000566783 655 280 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000566783 629 282 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding ENST00000566783 651 276 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000566783 700 281 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000566783 700 281 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000566783 604 283 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000566783 604 283 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000566783 630 285 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000566783 658 278 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000566783 658 278 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 617 283 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 282 UTR5 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 303 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 282 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 303 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 617 283 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 282 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 303 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 631 303 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 282 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 303 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 617 283 UTR3 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 282 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 303 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 617 283 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 617 283 UTR3 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 282 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 303 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 617 283 UTR3 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 282 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000566783 630 303 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000566783 679 281 UTR3 Trans
TCONS_00118358 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000566783 685 280 UTR3 Trans
TCONS_00118361 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000566783 685 280 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000566783 641 282 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000566783 554 280 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000566783 624 281 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000566783 662 281 UTR3 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000566783 631 282 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000566783 655 283 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000566783 655 283 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000566783 655 283 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000566783 602 282 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000566783 676 277 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000566783 676 277 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000566783 618 285 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000566783 676 277 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000566783 618 285 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding ENST00000566783 604 282 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000566783 630 278 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding ENST00000566783 629 279 UTR3 Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000566783 600 282 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000566783 600 282 UTR5 Trans
TCONS_00173730 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000566783 600 282 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000566783 651 280 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000566783 614 282 UTR5 Trans
TCONS_00191933 Small nucleolar RNA U13 novel protein coding ENST00000566783 506 275 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000566783 617 282 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000566783 617 282 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000566783 638 285 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000566783 638 285 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000566783 600 284 UTR5 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000566783 653 280 UTR5 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding ENST00000566783 618 282 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000566783 612 279 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000566783 648 282 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000566783 704 280 UTR5 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000566783 682 280 UTR5 Trans

Sequence

>TCONS_00249092 (1825 nt)
CTTTTAAATGGGGAAGGTGCTCTGAAGATTTGTGCCGAAACGCCCTCTCCTCGAGATTTAACTAATTGTTCTCTCCTCTCTCTGGCTGTTGGACGCGCAC
CTTTCCGGAGGATGGGGGAGGTAACCGAGGTCCTGAGCCGGTACCTGAACTTGGGTGAACAGAGAACCTCAACTTTTGCTTTCTAGCACTCGACCGCACC
CAGCAAGGCGTCCGCTTACTCAGTGGTTCTTAGTGTTTGGAGTGCTTAAGAATAACTGGTGGTGTTTGATTTCACCAAGTACATTCGGGCAGATCTTAGT
TCTTGGGGGGGTGGGGCTGGAATCTGCGGGTGTGACCTCCACTCTAGGTCTGTGCTGTCCAGCCAAGTAGCCATTGGCCACATGTGGCTGCTAAGCATGT
GAAATACAGCTAATCAAGACTGAAATATTAAAACACACACCAGTTTTAGAAGACTAGGAAAAAAGCAAACTTTTATTAGATGTTTATGTTGATTATATGT
TGGAAAGATAATATTTTGGATGTGTCAAACGTTAAAAATTAATTTCACCCATTTTTGTGACGTGGCTACTAAGGAATTTCAGGTGATGCTTGTGGCTCCT
CACACGGTTTCTATTGGACAGTGCTGCTGCAGGTGATTCGAAGGCGGGTGGGTGCAGGAACCCAGCTGAGAGTTCAGAAATTAGTGTAACTTTGGAGACA
AGTGTCTGTGGGGGAAGGAGCCTCCGGACGTGGAGATACAACTCTTGCTCCTAACATTTATCGAGTCTTTAATTAATGCCCTGGGTAACTATAAGGTTGG
AACTGTAATTGTCACCATATTGATGATGAGAAACTTGAGAAAGGATAAGTGACTTGTCTAAAATCACACAGTAAAACCTCAAATCAAACCCAGGCCCTCT
GGCTCCAGACTCTAAATTATACTCTGAATGATACTCACTGATTGTCCGAGGACACAAAGAGTGTCGAGGCACTATCTGCTGGGTGTCTGCAGAACCTTAC
TGTTCTAAAGCAAAACATTTTACCCCTGGACAAGAGCAGCAAAGGTGGCGTTCGGCCCTCCTTGGCTCTCATTTGACTGTTCAAAGCCAGGTGCTTTTCT
TTCTTGGGTCAGAACGTATTTTCAGCAGCATTTTGAAGCACCCCTGGCGTGCACTGCACAGGGAAACCAGGACCACATTGGTGTGCTGTGTCCTCCTTAC
CAACTGGCTCTTGGAGAAGGTGAGACAGAAGTAGCTGAGACTCCATTCCTGAGATCTTCACTTAACAACTCCTGCAGCTTGTGCAGAGCCTTACTAGAAA
TACTGAAGGCAGAAGTCCCTGGAAAATAGGGCCCATAACTAATTAGTAATTTGTTTTTGAGTAATTTGTTACCGTTATTTGAGCACATTCTGCAGTCCAG
GCATTTTGCTAAACTCTTACATGGCAGGCAGTCTCTCACGCAATTTCAATGCCTACTTTTTTTCTCCATCTTATTTTTGAAAAATGTTAAAAAAAACACA
GGAAGGTCGAGTTATACAGTTAATACTCACATAAAGACCACTTAAGGGCCGGGTCTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTT
GGCGGATCACGAGGTCAGGAGTTGGAGACCAGCCTGGTCAATATGGTGAAACCCTGTCTCTACTGAAAATACAAAAATTAGCTAGGCCTGGTGGCGTGCA
TCTGTAGTCCCAGCTACTCGGGAGGCTGACGCAGAAGAAATGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCACCACTGCACTCCAGCC
TGGGTGACAGAGCAAGACTCTGTCTC

Expression



Full and truncated open reading frames discovered in TCONS_00249092

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.