Detailed information on ENST00000567359

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000424496 sense_intronic sense intronic ENST00000567359 512 260 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000567359 523 262 noncoding Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000567359 649 472 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000567359 530 314 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000567359 530 314 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000567359 530 314 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000567359 530 314 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000567359 530 314 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000567359 940 583 noncoding Trans
TCONS_00219473 WD repeat domain 27 novel protein coding ENST00000567359 624 582 UTR3 Trans

Sequence

>TCONS_00219473 (4036 nt)
GCCCATCCCTGGATTGATGTAGTAGCCAGCAGCAAGGACATATGAAGGGTCTGGAAGTGGAAGGCTGCCACCCCTGCCCTGCTCCCACTTCTGGGCCCCC
AGGGATCCCCTGACATAAACAGTCCTGCAGGAGGAAATAATAGGTGGACTTGTCCCTGTGACACAGTGGAGATAATAAGGCCCACCCAGGTTCAAGAAAA
GTGGGGCAGCAGGGGAAGGGGATGGACTTTACCTCCTAGTGAGAAGATGATAAGGTCTGGAAGAGGAGGTATGGCAAAAAATATTGCTGTGGCCGTTACT
AGAATATATAATCTGACGCAGTTACCTAAAGTGAAAAGCGTGAAATAAAGGCTGAAGAGATAGGGAAAAAAAGTACATTTAAAAAAAAAGTTGTTTCATG
AATTTGAAAACAAAATGAAATAAAAAGCCTATTCTAAAATTCAAAAGTCAGAGAAACAATTGAACCTAAGTGTGTACTCAAGATGCTGGCATAACCACTT
GATAGGAACTACCCCTAGTTATTTTAAAACGCAGTTATTTGACTCTGTCCATTAAAGACAATTGAAAACCAAAAACCAAAACAACTGCAAAGGGAAATCT
TAAAGTATTTTCAATAATACTGCTTTTGGAGGTAGTGTTGGTATATTTATTGTTATATAAAATATAGTATAATATTGTGTGTATTGAAAGATAAATGTAT
ATGTTAATTTGGAGAACTAGAATATTGAAGTATGGGAGGAAGAAGATGCAGATATAAGACCAGCGAGATTAATTTAAAATGCTAGAGAATTGGAAGTGGG
ATTATACATATGAATTTATTAGGTGTTTTATCTTAGAAATTCATGTATTCTCTTTCTACTAAAAAGCCCTAGAAACAGTGACCAACCCAATAGCAATAAA
CTTCCTTAGCAAATAGATTATGGTCACTAGTGATCATTTTCTAGCAAAAGAAACCAAGCTGTCTTGAGAAAATGATTGAGTTTATATTTGAGGCAGGAAA
TAAACAAGAAGAATCTGTAAAATCTTGTCATACCAAGAAGCAGAGAGGCTATGAGATGTCATTAGGGTCATGTCATTTAAAGAAGCCAGTATGAGTAGCT
CAAAGATGAGATAATTTGAGCCTCAAAACAAAATAAGTGATTTCAATGGATTTAAATACACTAAATCTGTTTAAATACATAAGTTCATAATGATAGGGGA
AAACAAAATTATTTATAGGTTACCTTACAAAGATGATAGAAACCATCTCATTATTTTAGAAACGGAAAGGAAAAAAAAACATAAACAACTATCCTGCCTT
TGTTTTCAGAATTCCTTGTAGAAATAATTAACTAGTGGATGAAGAGAGTTTCTCTTTCTAGGTAATAAGCAACGAAAAAATGGCAGAATTAGAATATAAT
GAATTTGCAGTTCTTACTAAATTAATATATCTAGGCAGTAACCATCAATAAAAAGAAAGACCATATGACATTTGTATGTCCTGAAGTAAGTTCACAACGC
CATCTAGTCTTGAGCCAAAAATACTGCACCTGAATCTGATCCAGCCTCCAGGATGTATCTATTTATAGGAAACACAGTGGACAGGCGAACATGTTAAATG
ACACCACAGAGATGCAATCTGCGAACTTCCACTGTGGAAACAATCCAAATGATTCAACACGATGTTGCAAAGACAAAAGAATTATACATGAACAGGAGGC
TGGATGAATTAAAAAACATAAGAGATGTATCAATCATAATCTTTGGTTCTAATTTGGATTCTGATTTAAAAATAGACTGCAAAAAAATTTGTTAGAATAA
TATGAACAAAGACTAGATGTTTGCTGCCATTTAGAAATTCTCATTAGTATTTGTTCAGTTATGATAATGCATGCTGCTTCTGTTAAAAAAATACTTTTAA
TCTTTTACAGATACCTTCTAAATATTTATAGATGAAATCATATGATATCTAGAATTTTCTTTAAGACAATCTGTGGAAGGGGTGAGTGGATGTGTGCTCA
GGTGAGCTAATGGTAGCCATGAGTTTAATATTGAGGTTGAGCGATGGATACAGAGAAGTTCATCATACGAATCTCTCCACTTTGATGTTTTCTTGAACTC
TCCAATACTAAAAATTTAGCCAAAAAAATTAACAGGGGCAACGAACTTTCTTCTTTTTCCAAGGGCTTTTTATCGATGATTTTAAGAAAATGGTCAGACA
GCGCAGGCGTGTTTTACCTTAGTCCTTCCAAAGCAGTAAGGTGCACCCACTTCTCAGCCACCCTCCCTGACTTTGTTTTCACAACCCGAATTCACCAGGA
AAATACCAGGAGTCTGCTTTGTATTGTGCCATCTTTTAAATAATGCCTCACTTTCTAGTAGCAAAGTACCTCATTCTTTTTCTTGATACTTCAAAAAAAC
AAAATGAAACAAGAACTTCTCATTAGCTGAAAGTGTTTTTATCTAGTGAGAACTGAAATCTTCTTGGCTTATTTCCTCTTAGATCTAAACAATATTAACT
TTTTTTTTTTTTTTTTTCCCAAACAGAGTCTCCCTCTGTTGCCCCGGCTGGAGTGACTGCAGTGGCACGATCTTGGCTCACTGCAACCTCCACCTCCTGG
GTTCAGGGAATTCTCCTGCCTCAGCCTCCCAAATAGCTGGGATTACAAGCATGCACCACCATGCCCGGCTAATTTTTTGTGTTATTAGTAGAGATGGGGT
TTCACCATGTTGGCCAGGATGGTCTCAATTTCCTGAGCTCAGGTGATCCACCTGCCTCAGCCTCCCACAGTGCGAGGATTACAGGCGCAAGCCACTGTGC
CCAGCCTTAACAATTTTTTTTTGTTTGTTTTTGAGGCAAACTCTGACTCTGACACCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCTG
CCTCCTGGGTTCAAGTGATTCCCCTGCCTCACCCTCCCAAGTAGCTGGGACTACACACGCACCCCACCACACCGAGCTAATTTTTTGTATTTTTTTAGTA
GAGTCGGGGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCCTGACCTCATGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGAATTACAGGCTTGAGC
CACCGCGTCTGGCCCAACAAATATTTTTAAGATGCATTGTCTACTAACAGGAGATGCCTCTGATTCTGAAGTACTTTGCGATAAACAGCCACACAATAGC
CAAATGAAATCTTGAAATCAGAGGGTTGCTTTCTCATGAAGTTAGACTGCTTGAGAATTGCAGTGGCTTCTATATGGCAGGTGCTTAAATTGTCCAAGTT
GAAATTCTAATTTTTATAATGAGTAGGGATGAGTGCATGAAATGGTTGTGTGTTTTTTTATTTCCTACATACAATATCGAATTCAATCCCAAACTTGAAG
CATTGATGTAATTGAAACATGTTGGTAATTTTAAATCGTGCAGTTCTGTACATGATCAGAATCCTAATCATTATTAAAATAGGTGTTTCTATTATATGCA
TATGTATAAAAAGTCCTCCAAAATGTTAAATTACCTTTCTCATCTCAGGAATAGAGTCCCAATCACTTCCAGATTGAAGCACTTACGGGGGGAAAAGGCG
AAGGGCTCCAGTAATTTTAAATTGCTTCGTACAATGAAGAGTGCCTGTAAATTACTGAATGTGGGTTCTTCTCCGTGTGGATCACATTAAGGGAGCGTAT
AACCTTTCATACCGCCTGACTAGGATGATGGATGTGGAAATACACAGTTTGGGAGCCCTGTCTGCTTGCCTGTTAAGCCATTGACTGTTATATACTCTTG
GGCTTGAAACACCTTCCAGGCTGGAGGGGCCAGTATTGCATTTACTTTTATCCCATTTCTGTTTTCACGGCTACCCAAGAGGAAATAATTTGATTTGGGG
CTGCAGGGGGTAGGGTGGAAAAGTGCAGTCGGAAGACAGAGAAAATCAGCAAGAAGATTACTGAAAGGGAAAGAGGGGGAAACCAACCAGCTATATATTT
CCTGCAACATGAGTTAATGAAATTCCGTTCCTTCTTA

Expression



Full and truncated open reading frames discovered in TCONS_00219473

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.