Detailed information on ENST00000569087

lncRNA-RNA interactions

Number of interactions: 20

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257189 desmoglein 3 protein coding ENST00000569087 519 316 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000569087 575 266 noncoding Trans
ENST00000543196 polypeptide N-acetylgalactosaminyltransferase 6 protein coding ENST00000569087 525 304 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000569087 611 296 UTR3 Trans
TCONS_00010841 epoxide hydrolase 1, microsomal (xenobiotic) novel protein coding ENST00000569087 560 300 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000569087 611 296 UTR3 Trans
TCONS_00051891 RNA binding motif, single stranded interacting protein 2 novel protein coding ENST00000569087 556 311 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000569087 544 266 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000569087 519 316 UTR3 Trans
TCONS_00116669 desmoglein 3 novel protein coding ENST00000569087 519 316 UTR3 Trans
TCONS_00117136 CBP80/20-dependent translation initiation factor novel protein coding ENST00000569087 508 299 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000569087 640 278 UTR5 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000569087 553 307 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000569087 553 307 UTR3 Trans
TCONS_00159951 zinc fingers and homeoboxes 3 novel protein coding ENST00000569087 530 306 UTR3 Trans
TCONS_00159952 zinc fingers and homeoboxes 3 novel protein coding ENST00000569087 530 306 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000569087 647 302 UTR5 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000569087 607 304 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000569087 607 304 UTR3 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000569087 507 233 UTR3 Trans

Sequence

>TCONS_00240685 (2130 nt)
TTTTTTTTTTAAAGTAGCTGCTGAACACAGGAGAATCTGCCTTTTTCTTGAATCGTGGTTTTTTTGTTTTTTTTTTTTTCAAGACGGAGTGTTGCTGTTG
TCGCCCGGGCTGGAGTGCTGTGGTGCGATCTTGGCTAATTGCAACCTCCGCCTCCCAGATTCAAGCGATTGTCCTGCCTCAGCCTCCCGAGTAGCTGAGA
TTACAGGCACGCACCACCGTGCCTGGCTAATTTTTGTGTTTTTAGTAGAAACAGGATTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTTGTG
ATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGTTTACAGGCGTGAACCACTGCACCCGGCCTGAATCATGGTTTTTTGAAACCATTGGCATCTGAACCTG
TAGCTCTCTCTGGTAGTGTTGTGTGGTTTTAAATGTCATGTGAGCTGAGTTACTGACCTCAACCTACTGCCAGATGAAGGTGTGATCCTGTGATACCAAT
CTTGAGGGTCCCTTCTAGTTTTAGCAGTCAGTGACTTCTCTTGTTTATTTTTGTTTGAAAAAGTAAAAGGCTCTCTTTTTGGCTATAGAGTTGCATCTTG
AAATTTTTGACAAATTACATAGAGCTGAAGAAGGATACAAGTTTTGATATCTTAAAATCACAGGGTTGAAGCTTGAAAGGACAGTATTGGCATTGCAGCT
AAGTGGGAGTGTGAGGAAGCGCCTTCTCTAGGGCAGGTAATTGCATCTGTTAATGTGGTCCTTGGGCCCCTGAGTTGCTGCCTTCCAATCAGAATTCCCT
TAGCATTAGCCAGTGACGCCTGAATTAATCTCAGGTAGGACTTCTAACTTTTTTCCAAAATTATTTTTGTGCAGAGGTTTATCTAGATTTTTCTTCTAAA
TGTCCTCCTCCCCACTTGTTTTATTATTACTGTTTTTTTCTCTCTTTAATTTTTTTTTTTTTTTAATAGAGACATGGTCTCACTATGTTGCCTGGGCTGA
TCTCAGACTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCTTCCCAAAGTGCTGGGATTATAGGCGTGAGCCATTGCGCCTGGCTCTGTTACTGTTTTTCT
AACCTGAGTTACTTAGGATCATATTTTCATTCTTTTTTAAAAAGATGGGAGTTTTCTGAACTTTTCCTTAACTAAAAAGTGGAATGCATCTTAATATTTT
CCTTTTTTTACTTGTGTTTCTCCCCAGGGAGGGAAAAACATATTTATTGTGACAGAATTTAGCATATTTTAGGCCACATTAAAATACTGATAAATGTATT
AATCAGTGAAAATAGGTTATAGTGAAAAATATATACCATTTGATTAATAAAAATGTTATTGGAAAAATGCAAGAACTGCTGTAAGAATTGCTAACATTGT
GTTGGAAAATAAATATACTAAGCTAAGAAACAATGGGAAACTGTCATATGTAGGGCCAACAGCCTTTTTTTTTTTAAACCCTTCCAATTTATTAATATCT
AGTCTAATAAACCCTGATTTATAGGACCTCTGCACCTTTTTTGACTTTTTATTCATCCATTCTTAATATTCTACACTATGACAAAATCCTTAAAACTCCA
TTATTGATGAAATGGGAACAGACTTTTGTTTTTGTATGTTGGTGTTCTCTGAGTGGTGAAGGCCCAGGGAGAATGTTTTGTTTGGTGGTCACTTAGCATT
TGAAAACATCCACTTCCTTGTGACTTAGCTGGGTATCTTTTAACATCTGGAAGCCACGTCCCTGATTGAAATCTCTGGAGACAACTTACCTTTCACCAAC
TTGTCTGCCAAATTGCACCATGGACCAAGATTGCAGTGGCTGCATCAAGTCTAGGCCTGCCCTGAAGTCTGGATTTGTAAGTCCCCCATTTCAAATGGGG
CAGAAGGCAGAGGAGCAGAGGAGCCACTGTGCCTTTCGCTGTCCTGGAGCCAGTTGGCCTTCTGGTTTTGGTGAACCCTGCTTTTATAAGAGGACTCCCT
GGCATCTTCCAGTTTCCCGCTACTTGTTTTATGTATTATTTTATGTCTGTGTTTGTCCTGGAGTGCTGTAACTCCTTTCACTGTCTGCTGTAAGTTCAAC
TTCTTCAATAAAAGAAATGTTTCAAATTGGA

Expression



Full and truncated open reading frames discovered in TCONS_00240685

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.