Detailed information on ENST00000569869

lncRNA-RNA interactions

Number of interactions: 78

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000569869 616 286 UTR3 Trans
ENST00000264914 arylsulfatase B protein coding ENST00000569869 588 301 UTR3 Trans
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000569869 517 295 UTR3 Trans
ENST00000368489 ATPase, aminophospholipid transporter, class I, type 8B, member 2 protein coding ENST00000569869 501 323 UTR3 Trans
ENST00000375120 OTU deubiquitinase 3 protein coding ENST00000569869 643 302 UTR3 Trans
ENST00000378204 exostosin glycosyltransferase 1 protein coding ENST00000569869 537 300 UTR3 Trans
ENST00000394622 STEAP family member 2, metalloreductase protein coding ENST00000569869 541 308 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript ENST00000569869 519 266 noncoding Trans
ENST00000399120 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000569869 546 305 UTR5 Trans
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000569869 546 305 UTR5 Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000569869 599 305 CDS_UTR Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding ENST00000569869 552 306 CDS_UTR Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000569869 565 304 noncoding Trans
ENST00000534514 flavin containing monooxygenase 3 processed transcript ENST00000569869 528 335 noncoding Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000569869 524 307 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000569869 657 300 UTR3 Trans
ENST00000583694 FYVE, RhoGEF and PH domain containing 4 protein coding ENST00000569869 513 299 UTR5 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000569869 569 296 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000569869 538 305 UTR3 Trans
TCONS_00014134 collagen, type XVI, alpha 1 novel protein coding ENST00000569869 624 312 UTR3 Trans
TCONS_00023291 adenosine deaminase, RNA-specific, B2 (non-functional) novel protein coding ENST00000569869 516 259 UTR3 Trans
TCONS_00023292 adenosine deaminase, RNA-specific, B2 (non-functional) novel protein coding ENST00000569869 516 259 UTR3 Trans
TCONS_00023296 adenosine deaminase, RNA-specific, B2 (non-functional) novel protein coding ENST00000569869 516 259 UTR3 Trans
TCONS_00023298 adenosine deaminase, RNA-specific, B2 (non-functional) novel protein coding ENST00000569869 516 259 UTR3 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding ENST00000569869 509 297 UTR3 Trans
TCONS_00025775 zinc finger, MIZ-type containing 1 novel protein coding ENST00000569869 509 297 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000569869 528 288 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000569869 528 288 UTR3 Trans
TCONS_00046540 sestrin 3 novel protein coding ENST00000569869 626 307 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000569869 623 304 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000569869 623 304 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000569869 612 281 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000569869 612 281 UTR3 Trans
TCONS_00078200 GTP cyclohydrolase I feedback regulator novel protein coding ENST00000569869 624 304 UTR3 Trans
TCONS_00079955 thrombospondin, type I, domain containing 4 novel protein coding ENST00000569869 550 309 UTR3 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000569869 616 286 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000569869 616 286 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000569869 616 286 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000569869 616 304 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000569869 618 296 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000569869 618 296 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000569869 618 296 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000569869 629 322 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000569869 629 322 UTR5 Trans
TCONS_00104871 hepatic leukemia factor novel protein coding ENST00000569869 544 318 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000569869 657 300 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000569869 615 277 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000569869 615 277 UTR3 Trans
TCONS_00116327 low density lipoprotein receptor class A domain containing 4 novel protein coding ENST00000569869 608 306 UTR3 Trans
TCONS_00118361 l(3)mbt-like 4 (Drosophila) novel protein coding ENST00000569869 619 302 UTR5 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000569869 514 288 UTR3 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000569869 614 297 UTR3 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding ENST00000569869 622 282 UTR5 Trans
TCONS_00160558 cerebellin 4 precursor novel protein coding ENST00000569869 543 294 UTR3 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000569869 634 294 UTR5 Trans
TCONS_00175246 interleukin 20 receptor beta novel protein coding ENST00000569869 604 305 UTR5 Trans
TCONS_00186683 TAPT1 antisense RNA 1 (head to head) novel protein coding ENST00000569869 522 305 UTR3 Trans
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000569869 575 300 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000569869 575 300 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000569869 575 300 UTR3 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding ENST00000569869 599 304 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding ENST00000569869 599 304 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000569869 545 295 UTR3 Trans
TCONS_00212185 TEC novel protein coding ENST00000569869 511 297 UTR3 Trans
TCONS_00213775 LYR motif containing 4 novel noncoding ENST00000569869 617 303 noncoding Trans
TCONS_00216524 collagen, type XXI, alpha 1 novel protein coding ENST00000569869 539 308 UTR3 Trans
TCONS_00221037 POU class 6 homeobox 2 novel noncoding ENST00000569869 619 305 noncoding Trans
TCONS_00222612 carnitine O-octanoyltransferase novel protein coding ENST00000569869 559 305 UTR3 Trans
TCONS_00222619 carnitine O-octanoyltransferase novel protein coding ENST00000569869 559 305 UTR3 Trans
TCONS_00222623 carnitine O-octanoyltransferase novel protein coding ENST00000569869 559 305 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding ENST00000569869 613 295 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000569869 628 292 UTR5 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000569869 606 319 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000569869 664 306 UTR5 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding ENST00000569869 516 299 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding ENST00000569869 516 299 UTR3 Trans
TCONS_00251307 steroid sulfatase (microsomal), isozyme S novel protein coding ENST00000569869 555 308 UTR3 Trans
TCONS_00251309 steroid sulfatase (microsomal), isozyme S novel protein coding ENST00000569869 555 308 UTR3 Trans

Sequence

>TCONS_00251309 (3590 nt)
AGTAGGGCGGGGCCGGGGCCGGGCCGCGGGGCAGGGACTTCTGCGCGCCGCTGCTCGCCTGGCCCACTGGGCTTTTCGCATCTGGGGATCTGGGGCCAGT
GGAGGTCAGCCAGGTCCGCGAGCAACCTGTGCTCAGGCCAGCGGAAGCCTGACTCCAGGATTCGGTGGTGCCACAGACAGTTACTGAACGCCAATTTTGT
GCCTGCTTTAAGCGAACAGGACAGTTCCTGACCCTCAGTTCTTTCCAGGCTCTTCACTACTCTGCCTGCCCTGGAACTTCTCAGATCACGTCAGCTCCCT
CTGCCCAGGGGAAAAGCTACAAAAGGAAGAGTTCCAAGACTGCCAAATAAAGATAAACCAATACGCTTTAAAAAGTAGAATGTATTGGTTTATCAGATTT
GGGGATGATGCCTTTCTTCAAACTGCCCTTTCCTGTTTCACCCAAGAGACCTGGTTTCTAGGCCCTTCTCCAGAGTTTGCCCTGTGTCCACATCCTTCTC
ACTGTGGTCCTTGCGACTGGACATTCCCCTTCAGCTGGCTCTTTTTTGGGAGCCCACCTGGCTTATCCTTCTCTCATAACGTTTATTGAACTTTATTTTA
CCTGGCCTCCTGTCCAGGCTACATCTGAGACCATGCAGGAGCTGTGGAGATTAACGGTAAAAGGAACAGCACATTCAAGACTCTTCTAGGAGGTGGGGCA
AGATAGCCAAATAGAACCCTCCAGTGATCCTCCTCCTCCTCTTCCCTGGCAGGAACACCAAACTGAACAACTATCCACACAAGAAAGCACCTTCATGAGA
ACCAAAACTCAGGTAGCAATCACAGTAGCTGGTTGTAACGTCACATCAAGATATAAGGCAATGGCTGGGTGCGGTGGCTCACACCTGTAATCCCAGTGCT
TTGGGAGGCTGAGGCGGGCAGACCACCTGAGGTCAGGAGTTTGAGACCTAGCTGGCCAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAAATCAGC
CGAGTATGGCAGTGCACACCTGTAGTCCCAGCTACTCCGGAGGCTAAGGCAGGAGAATTGTTTGAACCCGGGAGGTGGAGGTTGTAGTGAGCTGAGATCA
TGCCATTGCACTCTAGCCTGGGTGACAGAGTGAGACTCTATCTCATAAAAGAAGAAAAAAAAAGGAACAAGGCAATGAAGAGGGTAGGAAAGACAGTCTT
GAATTGCTACCACCACCCCTCCCTCATCCTCTGGCAGCACCTGGCTGCCTGGCATAGAGAGAGAATCTGTGTGCTTATGGGACTTTGCATTGGAACTGAG
TTTTGCCCTGTCACAGTGGAAAGCAACTCAGGGCAGAATTCAGCTAGTGCCCACAGAGGAAGCACTTAGAGAAACCCTAGCCAGAGGGGAATCATCCATC
CCAGTGGTCAGGTTCTGGCGAGCCCCACCACCACTGGCTAAAGTGCTTCAGGGTCCTAAATAAATTCGAAAGGCAGTCTAGGCCACAAAGACTGCAATTC
CTGGGCAAGTCCTGGTGCTGTGCTGAGCTCAGAGCCCGTGGACTTGGGGTGCACACAGCCTAGTGAGATACCAGTTGGGGAGCCAAAGGAGTGTTTATGT
CACCAGTCCCCCAACCCCAGGCAGCACAGCTCACGGCTCCAGGAGAGACTCCTTTCCCTTAGAGGAAAGGAGAGGGGAAAGTAAAGAGGACTTTGTCTTA
CAGCTTGGATACCATCCCAGCCACAGTAGAATAAAACACCACGCAGAGTCCCGAAGCCCCCTTGCCAGGCTCTATCTCCCAGATATTTCTAGAGCTACCA
TGGGCCAGAAGGGAACCCGCTGCTTTGAAGGAAAGGACCCAGTCCTGGCAGGATTCATCACCTGCTGACTAAAGAGCTGTTGGGCCTTGAATAAACATTT
GTAATAGCCACAGTACTGGGTGAGGCCCAGTACTGTGCTGCCTTCAGGTGTGACCCAGTGCCTTCCCAGTAATGGTTGCCACAGGGAGAGACTCCTTCTG
CTTAAGGAAAAGAGAGGAAAGAGTTAAAAAGGAGTTGGTCTTGCAACTTGGGTACCAGCTCAGCCACAGTAAAATAAAGCACCAAGTAGGTTTCTAAAGC
CCGGACTCCATGCCCTAGCTCCTGGACAGCATTTCTAAACCCACCCTGGGCCAGAAGGGAACCTGCCACCCCAAAGGGTAAGACACAAGCCTGGCTGGAT
TCACCACCTGCTGACTAAAGAGCCTTTGGGCTTTGAATAAACATCAGCAATAACCAGGCAATAGTCACCATGGGCCTTGGGCAAGACCCACTACTGTGCT
GGCTTCAGGTTTGACACAGCACAGTTCCAGCAGTGGTGGCCACAGGGGTGCTTGTGTCACTCCTCTCCCAACTCCAGGCAGCTCAGCATGGAGAGAGAGA
CTCCATTTATTTGGGAGAAAGTAAGGGAAGATAACAAGAGACTCTGCCTGGTAATCCAGGGAATTCTCTCGGATCTTACCCAAGACCATCAAGGCAGTAC
CTCTGAGTCTACAAGAGTCACAGCATCGCTGGGTTTGGGGTGCCCCCTAATGCAGTTACAGCTGCAGTGACCAAATATTTACATCACAACACTCATTTCC
CTTTGAGTACTTGGAAAAGCCTTCTGAAGAAGGATGAGTACAAATAAGCCCAAACTGTGAAAATTATGATAAATACCTAATTATTCAATGCTCTGCATTG
ACCAACAGTCACAAACATCAATACCATCCAAGAAAACATGACCTAATCAAATGAACTAAATAAGGCACCAGTGACCAATCCCAGAGTGACAGAGATATGT
GACCTTTCAGAGAATTCACTGTCACTGAGAAAGCTCAGTGAAATTCAAGATAGCACAGAGAAGGAACTCAGAATCCTGCCAGATAAACTTAACAAAGAGA
TGGAAAAAGGAACTCAGAATCCTGCCAGATAAATTTGACAAAGAGATGGAAATAATTTTAAAAATTAAATAGAAATTCTGGAGCTGATAAATTCAACTGA
TACACCAAAGAATGCACCAGGGTCTCTAAACATGAGAACTGATCAAGCAGAAGAAAGAATTAGTGAGCTTGAAGGCAGGCTGTTTGAAAATACACAGAAG
AATTGAAAGAAAAAATAACAAAAAAGGATGAAGTATGCCTACAATATCTAGACAATGGCCACAAATGGGCAAATCTAAGAGTTATTGGCCTTAAAGAGAA
GGTAGAGAGAAATTAGGATAGAAAGTTTATTCAAAGGAAGAATAACGGAACTTTCCAAACCTAGAGAAATATATAAATATTCAAGTACAAGAAAGTTATA
GAATACCAAGCAGATTTAACCCAAATAAGACTACCTCATGTCATTTAATAATCAGACTCCCAAAGATCAAAGATAAAGAAAGGATCCTAAAAGCAGCAAG
AAAAAAGAAACAAATAACACACAAAGAAGCTCCAATGGGTCTGGCAGCAGGCTTCTCTGTGGAAAGCTTACAGGCCAGGAGAGTGGCATGACATTTAAAG
TACTGAAGAAAAAAAACATTTATCCTAGAATAGTATATCCAGCAAAAATGTCCTTTAAACATGAAGGAAAAATAAAGATTTCCTAGACAAA

Expression



Full and truncated open reading frames discovered in TCONS_00251309

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.