| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000553936 | gephyrin | nonsense mediated decay | ENST00000570843 | 552 | 215 | CDS_UTR | Trans | |
| TCONS_00075834 | forkhead box N3 | novel protein coding | ENST00000570843 | 605 | 381 | UTR3 | Trans | |
| TCONS_00075835 | forkhead box N3 | novel protein coding | ENST00000570843 | 605 | 381 | UTR3 | Trans | |
| TCONS_00103261 | Rap guanine nucleotide exchange factor (GEF)-like 1 | novel protein coding | ENST00000570843 | 832 | 451 | UTR5 | Trans | |
| TCONS_00103262 | Rap guanine nucleotide exchange factor (GEF)-like 1 | novel protein coding | ENST00000570843 | 832 | 451 | UTR5 | Trans | |
| TCONS_00123889 | ribosomal protein SA pseudogene 58 | novel protein coding | ENST00000570843 | 705 | 382 | UTR5 | Trans | |
| TCONS_00123899 | ribosomal protein SA pseudogene 58 | novel protein coding | ENST00000570843 | 705 | 382 | UTR5 | Trans | |
| TCONS_00141667 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000570843 | 635 | 452 | UTR3 | Trans | |
| TCONS_00141670 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000570843 | 635 | 452 | UTR3 | Trans | |
| TCONS_00141673 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000570843 | 635 | 452 | UTR3 | Trans | |
| TCONS_00141679 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000570843 | 635 | 452 | UTR3 | Trans | |
| TCONS_00141681 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000570843 | 635 | 452 | UTR3 | Trans | |
| TCONS_00159951 | zinc fingers and homeoboxes 3 | novel protein coding | ENST00000570843 | 728 | 381 | UTR5 | Trans | |
| TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | ENST00000570843 | 504 | 215 | UTR3 | Trans | |
| TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000570843 | 753 | 449 | UTR5 | Trans |
>TCONS_00252827 (747 nt)
ATAGCCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGTGAGATTTTGTCGGATGGATT
AGACTTGCAACTTGGAAGAAAGTAAACTAAATAAGAAAACGTGGAAGTGACTCCGTATACCTTGCAAATCGGGAATTGTTGGTCAGGCAAACGCAAAACG
CTCCACCAACCAACTGGCTTCAGGATCCCCTTTGTCTTGTTTCATAAAAAAAAGAGGCCGAGCGTCGTGGTTCATGCCTATAATCCTCTCACTTTGACCC
TAGGAGTTTGAGACCAGCCTAGGCAACATGGTGAGACCCCCGGCCCTTAAAAAAAATACAAATTTTCGCCAGGCTTGGTGGTGTGCGCCTGTAGTCCCAG
CTATTCCAGAGACTGAGGCAGGAGAATCACTTGAACCCGGGAGGTAGAGGTTACAGTAAGCCGAGACTGTGCCAGTGCACTCCAGCCTGGACAACACAGT
AAGACTCCGTCTCAAAATAATAATAAAAAGAAATTGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGCGGGCGGATCACG
AGGTCAAGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAAAGAGAAAAAATTAGCCGGGCATGGTGGTGGGCGCCTGTAGTC
CCAGCTACTAGGGAGGCTGAGACAGGAGAATAGCGTGAACCCGGAAGG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.