Detailed information on ENST00000572035

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000572035 595 243 noncoding Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000572035 623 288 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000572035 594 243 UTR5 Trans

Sequence

>TCONS_00135884 (737 nt)
AGCGGTTGGAGCAGGGGCTCTGCTGCGACCTTTACGGTAGTGAGGTTAGGGACGATGGGAGAGCAGCTTTGTTCCTGAAGTGCCGTCGAGGATTAGGATC
GAGTTTCTTCGATCGTGAGGGCAATTATTAGTGGCCTCTAGCCCCCCAGATGGCATCTTGAGGAGAGAGAATCCACGCTACGAGAACTAACATAGTGGAC
ATCGCAGTTGTCCGTAGCCGATTTGCGGGTTACGGAGTTGTTGCAAGTAAAGAAGGGGAAATCCGAGCGTTCTCGCGTTGGATTTCCTCCACGTGTGAAG
TGGGAATGGTAGTGATATCTCGTGCTATCTCTGTCAAGGGCAAGAAGGAGAAGGAATTTATTTGAGGCCCTACGACGTGGTAGGTTCACCCTCAGCCTTT
GTTCTTATTTCATCTTATTTGTGGAGAAGGTCTTTTCGTTCCTATTTTACAGGTGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCA
GGCGGATCATCTGAGATCGAGAGTTCGAGACCAGCTTGACCAACATGGAGAAACCCCGTCTCTACTAAAAGTACAAAATTAGCCAGGCATGGTGGCACAT
GCCCGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAGTAGCTTGAGCCCAGGAGGCGGAGGTTGTGGTGAGCCGAGATCGCGCCATTGCACAGCCTG
GGCAACGAGCGAAACTCCATCTCAAAAAAATAAATAAA

Expression



Full and truncated open reading frames discovered in TCONS_00135884

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.