Detailed information on ENST00000572594

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00016418 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-... novel protein coding ENST00000572594 742 331 UTR3 Trans

Sequence

>ENST00000572594 (642 nt)
CAGACCCTTTATGGGTGTCGGGCTGGGGGACGGTCAGGTCTTTCCCTTCCTACGAGGCCATATTTCAGACTGTCACATGGGGAGAAACCTTGGACAATAC<br />CTGGCTTTCCTAGGCAGAGGTCCCTGCAGCCTTCCACAGTGTTTGTGTCCCTGGGTACTTGAGATTAGGGAGTGGTGATGACTCTTAACGAGTATGCTGC<br />CTTCAAGCATTTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTGAGTTTGACACAGCACACGTTTCAGAGAGCAGGGGGTTGGGGG<br />TAAGGTCATAGATTAACAGAATCTCAAGGCAGAAGAATTTGTCTTAGTACAGAACAAAATGGAGTCTCCTATGTCTACTTCTTTCTACACAGACACAGTA<br />ACAATCTGATCTCTCTTGCTTTTCCCCACACTCTCACTCAGCATAATCATGCTGATATTTATCCAAGTCTAAAATCCTTTGATATTCATCCGTGATACAC<br />ATCCATGTTGCATGTGTCAAAAGCCCATTCCCCTGTACGGATCTAACACAGCCTGTTTATCCATTCACATGTGGATGGATTTCTGGATCATTTCCAGTTT<br />TTGCTCATACAAATAAAGCCGCTGTGAACCTTTGTGTACAAA

Expression



Full and truncated open reading frames discovered in ENST00000572594

In silico ORF/peptide predictions
>peptide 1 (58 aa)
RPFMGVGLGDGQVFPFLRGHISDCHMGRNLGQYLAFLGRGPCSLPQCLCPWVLEIREW

>peptide 2 (53 aa)
QTLYGCRAGGRSGLSLPTRPYFRLSHGEKPWTIPGFPRQRSLQPSTVFVSLGT


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT056751 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P61583|NP5_HUMAN (Evalue: 2.0E-13)