Detailed information on ENST00000575337

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000513143 podoplanin protein coding ENST00000575337 530 269 UTR5 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000575337 601 268 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000575337 557 258 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000575337 584 269 UTR3 Trans

Sequence

>ENST00000575337 (827 nt)
AGAGATCCCAGATTACAGGAATGCAGTAATCGTGGCCAAGTCTCCAGCCTCGGCGAAGAGGGTCTCCCTCTGTCGCCCAGTCTGGAGTGCAGTGGTGTGA<br />TCTCGGCTCACTACAACCTCCACCTCCTGGATTCAAGCGATTCTCTTGCCTCAGCCTCCTAAGTAGCTGGGATTACAGACGTGCGCCACCATGCCCAGCT<br />AATTTTTGTATTTTTGGTAGACATGGGGTTTCACCATGCTGGTAAGGCTCTTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTCGGCCTCCCAAAGT<br />GTTGGGATAACAGACGTGAGCCACTGTTGGGATAACAGGCGTGAGCCACTGTGTTTAGTGGTTAGTGCCTTTAGAATCCTGAAGTTATTGATGAATAGGT<br />CGAAGTCCAGAGCTATTGTTTTGGAGTTGTTTGACAATGAGCAGTTGTTTTGACTAAAAGGGATCATCAGAGAAAGTGTTGCTTTTGTAAGGAACAGAAC<br />TTGCTTGAATGAGTTGTTTGAAATTGTTTTCTCTGAATAACTGAGTGAATAGGAAACAAAAGGATAGCTGAGGCCCTGTGTCTTGTTCTTTCTCACCCAT<br />GATGTAAATTAACTCATTATCGTACAATCAGGATCAAGTTGCTTTAGAATTCCTCTCTGTCAGTGCATGAAACAAAATGACACAGAGAAACCATCCTGAT<br />TGATTTTGGAATTAGATGGGAATGCAAAGTATCTGATTAAGTTATATGGAGTATCCAGAAACTCCCATTGCTGTGCAGGTAATAATTTTATTTATTTATT<br />ATTTTACTTATTTATTTTTTTGAGACA

Expression



Full and truncated open reading frames discovered in ENST00000575337

In silico ORF/peptide predictions
>peptide 1 (76 aa)
MGFHHAGKALLELLTSSDLPASASQSVGITDVSHCWDNRREPLCLVVSAFRILKLLMNRSKSRAIVLELFDNEQLF

>peptide 2 (53 aa)
RDPRLQECSNRGQVSSLGEEGLPLSPSLECSGVISAHYNLHLLDSSDSLASAS


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT146414 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q86U02|CN165_HUMAN (Evalue: 4.0E-23)