Detailed information on ENST00000575978

lncRNA-RNA interactions

Number of interactions: 83

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000299157 IKBKB interacting protein protein coding ENST00000575978 503 291 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding ENST00000575978 647 298 UTR3 Trans
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000575978 525 296 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding ENST00000575978 608 299 UTR3 Trans
ENST00000382142 myotubularin related protein 12 protein coding ENST00000575978 628 288 UTR3 Trans
ENST00000389534 zinc finger protein 841 protein coding ENST00000575978 609 263 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000575978 525 296 UTR3 Trans
ENST00000398055 chromosome 12 open reading frame 66 protein coding ENST00000575978 622 313 UTR3 Trans
ENST00000407780 inducible T-cell co-stimulator ligand protein coding ENST00000575978 607 306 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding ENST00000575978 647 298 UTR3 Trans
ENST00000426391 zinc finger protein 841 protein coding ENST00000575978 609 263 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000575978 591 290 UTR5 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000575978 534 308 UTR3 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000575978 644 302 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000575978 632 303 noncoding Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000575978 597 301 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000575978 595 301 UTR5 Trans
ENST00000513269 NEDD4 binding protein 2 protein coding ENST00000575978 536 288 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000575978 625 290 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000575978 642 307 UTR3 Trans
ENST00000591226 tropomyosin 4 retained intron ENST00000575978 631 301 noncoding Trans
ENST00000594295 zinc finger protein 841 protein coding ENST00000575978 609 263 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000575978 652 297 UTR3 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding ENST00000575978 614 299 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000575978 619 289 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000575978 642 294 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000575978 643 302 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000575978 624 298 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000575978 645 299 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000575978 620 303 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000575978 624 298 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000575978 611 305 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000575978 620 303 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000575978 645 299 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000575978 618 301 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000575978 642 307 UTR3 Trans
TCONS_00051246 sterol O-acyltransferase 2 novel protein coding ENST00000575978 604 287 UTR5 Trans
TCONS_00060110 chromosome 12 open reading frame 66 novel protein coding ENST00000575978 622 313 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000575978 670 300 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000575978 670 300 UTR3 Trans
TCONS_00085508 neuregulin 4 novel noncoding ENST00000575978 638 302 noncoding Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000575978 646 293 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000575978 646 293 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000575978 646 293 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000575978 646 293 UTR3 Trans
TCONS_00105791 arylsulfatase G novel protein coding ENST00000575978 626 298 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000575978 608 298 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000575978 608 298 UTR3 Trans
TCONS_00114623 glutamine rich 2 novel protein coding ENST00000575978 605 303 UTR5 Trans
TCONS_00114628 phosphoribosyl pyrophosphate synthetase-associated protein 1 novel protein coding ENST00000575978 605 303 UTR5 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding ENST00000575978 618 301 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding ENST00000575978 606 303 UTR5 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding ENST00000575978 623 308 UTR5 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000575978 609 263 UTR3 Trans
TCONS_00135644 zinc finger protein 841 novel protein coding ENST00000575978 609 263 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000575978 601 295 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000575978 601 295 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000575978 615 300 UTR3 Trans
TCONS_00163891 inducible T-cell co-stimulator ligand novel protein coding ENST00000575978 607 306 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000575978 604 299 UTR5 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000575978 607 291 noncoding Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000575978 635 301 noncoding Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000575978 612 301 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000575978 600 300 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000575978 603 301 UTR3 Trans
TCONS_00190499 palladin, cytoskeletal associated protein novel protein coding ENST00000575978 614 313 UTR3 Trans
TCONS_00190504 palladin, cytoskeletal associated protein novel protein coding ENST00000575978 614 313 UTR3 Trans
TCONS_00191796 G protein-coupled receptor 125 novel protein coding ENST00000575978 619 302 UTR5 Trans
TCONS_00191797 G protein-coupled receptor 125 novel protein coding ENST00000575978 619 302 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000575978 632 294 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000575978 632 294 UTR5 Trans
TCONS_00195828 LRP2 binding protein novel protein coding ENST00000575978 602 284 UTR5 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000575978 636 290 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000575978 628 288 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000575978 629 299 UTR5 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000575978 625 287 noncoding Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding ENST00000575978 610 298 UTR5 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000575978 611 287 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000575978 618 285 UTR3 Trans
TCONS_00248986 transmembrane protein 246 novel protein coding ENST00000575978 529 309 UTR3 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000575978 621 302 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000575978 638 299 UTR5 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding ENST00000575978 635 295 UTR3 Trans

Sequence

>TCONS_00253055 (3592 nt)
ATTGTGGGTGACTCAGGCCAGCCTCTATTGCTTTTTATTTGGTATCTAGGACTCTCGGGGTGGGTTTCTTGATCCCTAGATCACTTCAGATTGAAGAAGC
ACCAAAGGGAAACCAGATTCCCTCAACCAGATAACACTCCGGTGGGCGGGGAGTAGGGACGGAGAGAACGCGTGGATGTGGCCTGGTGCTGTAAAAATGA
GATTTCCTGTCAAACGTACCTTATCACCACTCTGCCTCTAACCCAGTGGGAACACTGGGCGTGCACCTTCCATTTCTGGGTGTGCCGCCCTAAACATCCC
TCACCTGTCTTGCTCCCTGTCCCAGGTTTCAAAGAGCAGATTTACGATGTATACAGGTACCTGCCTCCAGCCACACAGGTGGTTCTCATCAGTGCCACGC
TGCCACACGAGATTCTGGAGATGACCAACAAGTTCATGACCGACCCAATCCGCATCTTGGTGAAACGGTAGGAGCCCCTCTTGTCAAGTTTACTAAAACA
CTGGGCCGCATTTATAAAGGATTTTATGTCGTAATTTCAAAAACTTTTTATAGCCAGAGTCTGGCTGTGTTGCTGAAGCTCGTGTCAAAACCCGGACCTC
AGGCTATCCTCTTGCCTGAGTGTAAAGGAATTGAAAGCATGCAAATTCTTTTAAAATTCCTGTTTTAAAAAACCAAATAGGCTGGGCAACATATAGAGAC
CGTATCTCTACCAATAATAAAAAATTAGCCAGGTAGGGCGGCACATGCCTATAGTCCCAGCTACTCAGGAGGCTGTGGTGGGAGGATCGCTTGAGGTCAG
GAGGCTGAGGCTGCAGTGAGCTTTGATTGTGCCACTGTACTTCAGCCAGGGCAACAGAGCAAGACCCTGTCTCAAACAAAACAAAACAACCCATCTTTTA
TAATCCTCATTGTGGTTTGAACCAATAATTCTAAATTTAAAAATTAGGTGACTATTTATTTATCAGTGTTTCGTTTAGAATCGTATTCCATGTGGTGCAC
ATTGTGAAATGTTAAGTAGGATACAGAATGGAGGCCTGTGTGACGGAAGTGGTGATAGGATGGAGGACAGGGCTGGGGCTGCTGGGTCTGCACCAGATAT
CACGGTGTGACCTTTTCCACCAGGGTCTCCCTGGATCCTGGCTTGGCCCACCCTCAAGTCCTAGAAGGAAGGATGAGTATGTAACAGGATTTGTCTTTGT
CCTTCAGTGATGAATTGACTCTGGAAGGCATCAAGCAATTTTTCGTGGCAGTGGAGAGGGAAGAGTGGAAATTTGACACTCTGTGTGACCTCTACGACAC
ACTGACCATCACTCAGGCGGTCATCTTCTGCAACACCAAAAGAAAGGTGGACTGGCTGACGGAGAAAATGAGGGAAGCCAACTTCACTGTATCCTCAATG
CATGGAGACATGCCCCAGAAAGAGCGGGAGTCCATCATGAAGGAGTTCCGGTCGGGCGCCAGGTGGGTCTGCTATGCTGTGGCTCTGCAGGTCAGGGTTT
GCTAGACTGTGTCTAAGCACTTCATATGTACCGCCTAAGTGCAGGCCCCACACCCGGGGGGATGCCAAGCTTCTGCTCTGAAAGCTGAGGCCCTGGGTGA
GCAGAAAACCTTCCAGTTAAGGAGGGGTCCGCTGTGCTCCTGTAATACTTAGGTTGAGGTGATAACTAGCCTTAACTAGCCAGGTTGGTCACCTTGGTTA
CAAGCGTGTGTCTTCTTTTCCAGTAAGTAGGGGGGTTTTCTGTTCATCGTTTCGATTAGTTTAATTCCACAGTGGTCAGAAAGCGTGGATTGGGTGGTTT
CATTCATTTGAACTTGATTCAGACTTCCTTCTTTGCCCACCTTGTGGTCAGCTTAACATATGTGCTGTGTGTGTCTTTTTTTGTTTGTTTGTTTTTGAGA
CAGTCTCACTTCGTTACCCAGGCCGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGATTTCAAGTGACTCCTGTGTCTCAGCCTCC
CGAGTAGCTGGAATGGCTAATTTTTTTTTTTTTTTTTCATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAG
GTGATCCATCTGCCTCAGCCTCTGGCAGTGCTGGGATTACAGGCATAAGCCGCCGCCATGCCCGGCTGAAGTTACCGTTTTTAATTTTTTGCTAGGCAAA
AGTGAAGTATTTTTCCCAATTATTGGTTTAGGACCGATTAAACAAGTTAAAGATAGTCTAGTAAAAGATGTCTATTTTTTTAATCTGATGGAGCACATGA
CCGAAGTAACTAAATCCACCAACAGCCCCTCTGCACAGGGGTTTCTGGTGCTGTCCCTGAGGCTTCACGTTTGCAGACAGACTGTTGAGAGAGGAGAATC
TCGTATATTTTGGACCTGCAGCCAGGATTCCTTAAAATTAGCAATGGAAGCAAGTCCAGTCTTACACTTGTATGAGTAATTTAATCGCCTCAAACACTCT
TTCTTTTTGCAGCCGAGTGCTTATTTCTACAGATGTCTGGGCCAGGGGGTTGGATGTCCCTCAGGTGTCCCTCATCATTAACTATGATCTCCCTAATAAC
AGAGAATTGTACATACACAGGTAAGGTGCAAGCTCTCATTGGCTTCACTTCTGTGACACATTTACTAAATCTTGATTGTTATATATACTAACTGTAATAT
TATTTTATTCCTGAAGAATTGGGAGATCAGGTCGATACGGCCGGAAGGGTGTGGCCATTAACTTTGTAAAGAATGACGACATCCGCATCCTCAGAGATAT
CGAGCAGTACTATTCCACTCAGATTGATGAGATGCCGATGAACGGTAGGAAATCGTCCAGCTCTACTGTAATTGTAGAGGGAACTTCCCTATTCTTAGTT
TGGGGCACCTGAGTTTGTTTTTTTGTTGTTGTGGGTTTTTTTGTTTTGTTTTTGAGACGAAGTTTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGA
TTTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGACACGTGCACCATAGCCAGCTA
ATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAATGATCTGCCCACCTCAGCCTCCCAAAGTG
CTGGGATTACAGGCGTGAGCCACTATGTCTGGCCTGTTTTTTGTTTTGAGAAGTCTGTTGTGAGGTTTTAGTTAAATTTACGTTAACAAATTTTCATTTT
GTTTGTGTTGTTCCTTAATCTGTTTCTTTCTTCACTTTCAGTTGCTGATCTTATCTGAAGCAGCAGATCAGTGGGATGAGGGAGACTGTTCACCTGCTGT
GTACTCCTGTTTGGAAGTATTTAGATCCAGATTCTACTTAATGGGGTTTATATGGACTTTCTTCTCATAAATGGCCTGCCGTCTCCCTTCCTTTGAAGAG
GATATGGGGATTCTGCTCTCTTTTCTTATTTACATGTAAATAATACATTGTTCTAAGTCTTTTTCATTAAAAATTTAAAACTTTTCCCATAAA

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.