Detailed information on ENST00000577439

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000577439 505 294 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000577439 605 286 UTR3 Trans

Sequence

>TCONS_00030130 (3371 nt)
CAGTTTCCTGAGAAGCCAGTTTCTTAGAGCTGTCATTCAAGAGTGGGTCAAATTTGAGATATAAAAACCTTTCTCAAGGTAGACTCTTTGGCCCCTATGC
CTAGTATGTCAGCTGGGCCTCTGAAGCTCTCCTCTTTGAGGTCCTGGCAGGCTCTGGCCCCTGTTGAGAAGGGGAAGCAGTCATGTGAACTCATGTGCTG
GAAGAATCCACTCTACCCCTTCCCTGGCTTCTCTGCTGCAATTTTTGTCTTTAAACGTATTTTCAGATCCTTTGCACATGGCCTGCTATCAACAATCCTC
TACAATGATTCTCAGCATCACCTAGGGAGCTTATGTAAAATCTCAAATTCCTGGGCCCTATCCCCAGAGTTTCTTATCAAGTAAGTCTGCATTGGGATCT
GAGGATTTGCATCTCTAACAAAAATTCCTAGGCGATGCTCACACTGTTGGTGTAAGGTTTCCTTGATGGAGAACTATCAAAGCAGTCAAAGCTATCAAAA
TAAAAAAGAATTCTGATTGGGTGCAGTGGCTCACACCTGTCATTCCAGCACTTTGAGAGGCCAAGGTGGGCAGATCACATGAGGCCAGGAGTTCAAGACC
AGCCTGGCCAACATGGCAGAAACCCCATCTCTACTAAAAATACCAAAATTAGCCGGGCATGGTGGAACACACCTGCAATCCCAGCTACTCGGGAGGCTGA
GGCAAGAGAATCGCTTGAACCTGGGAGGCAGAAGTTGCAGTGAAACAAGTTGGTGCCAATGCATTCCAGCCTGGATGATGGAGCGAGACTCTGTCTCAAG
AAAAAAAAAACAAAAACAAAAACAGAACTCTGCCTCATAGCGTCTTTTAAGTTATACACTGGACCTATCCTTTCCTCACTGACAGACATTTTAAAAATTT
TTTGGTAAGGCCTAGTTCATATAAAATGTAATCCAAGCCAAAAGTTAACAAGAATAAGGGGAGGAAAGGGGACTCCAATAGCAGAGAAAGGTATTTACCT
GGGATATACACTGCAAGAAAATCAAAGCTATAAGAAACGTCCATGAATAGTAGCCATAAGGCATCAGAGTGATAAAATTCCTGTCCCTAGGAGGGAATAT
TGGAGTTTGCCAGAGAAACAGAATGAGAGAGACAGAGAGGTTTATTGTAGGAATTGGCTCATATGATTACGGAGGCTGAGAAGACCCACGATCTGCCATC
TGCAAGCTGGAGAATCAGGAAAGCTGGAGGTGTAATTCAGTCAAGTCCAATGGCCAGAGAAGCAAGTGTACTGATATCCAAGAGCAGGAGAAAATAGATG
TCCCAGAACAAGCAGAGAGGCTGATTTTGTCCTTCCTCTGCCTTTTTGTTTCATATGGGGCACTGAATGGACTGATGCCCATCCACATTAGTGAGGGTGG
ATCTTCTTTACTCAGTCTACCAGTAGAAATGTCAATGACTTCCAGAAACACCCTCACCAACACACGTGGAAATAATGTTTTACCAGGTATCTGGGCATCC
CTTGGTTCACTCAAGTTGACACAAAATTAACCATCACAGAAGGAGACTGGCCTTACTCTGAAATTAGGAAACTAAAGAAGTGACCAGAATGGAGACTAGG
TAGAGACAACTAGTTCTCTACCAAACATGTACAGTTATTCGTTGGTATCTGAAGGGGATTGGTTCCAGGAACTCTCAGGGATACCAAAATCTGCAGGTGC
TCAAGTCATTTATATAAAATATTACAGTATTTGCATATAACCTTTGCACATCTTCCATATACTTTAAATCATCTCTACATTACTTATAATAATGAATGTG
TAAATGCTATGAAAATAGTTACTACACTATTGTTTATTTGTATTTTTATTGAATTGTTTTGGGGTGGGGGGCAGCTGTATCTTTCTTAGTAATAGAACCC
CTGGTTTTAGCTGGGCACATGACTGCCCTCAATAAAGATTAAAGTACCCCAGCCTTCCTTGAGATTGTGGCCATGTGACTGAACTTTAGACAGTGAGATA
TAAGCAGATATCTTCTGTGGCAGTGTTAGGAAACTATTAAAGACAGTAAGAACATTGCCCTTTGCCTTCTTTTTCCTTTCTTCATTTTTCTGCCTGGAAT
GCAAATGTGATGGCTAACACCCTAGCAGCCATTTTAGATTATGAAGATGAGAGTCACTCCCCAGGAAGGGTGGACCTGAAAGCTGGATTCTAGATGTGGA
ATGACAATACCAGCCCTGGACTACCTACCTGTAGGCTGTGTGTGTGTGTGTGTGATTGACAGAGAGAGAGAGAGATAGATACCACAAGTAACACAAAGCA
TCATACCTGGGACTGGGAAGGTTAATGTTTAAACATTTTAAATGTGGCATTGGTTTGTTGAAGACAGTCAAGCAGTAGGTGCTGCAGGCTTTGTTGAGGC
TAGAAAGCTGTTGGTCTTTATTAGGTGATGGCAAAACAATGGATCACATTTTCATGTGCTGTGTCTTGGGAGGCAAATGATGAGAATGTAGGATTGGGGA
AAATGGTAAGGAAAATCCAAAATGTTCATGTTTTCTAACCCCTTCTTGCCAATCTTAAAAGAAGGACAAACAGGCTAGATTAAGCAAGTCTACAGTTACA
ATTGGAAGGAAACACAGCCGTACTAAGGAAGTACTCTGTCTGTGGCCTGCAGTCTAGTTTGACTAGGTCCTGTATTTGAGCTTTGAAAGAGTAAAGAATA
CAAGTGCTCGTATACCCCTGAAGTAGTTACCAGCAGTGACTGCAAGGAGGTAATCTTATGGGATGAAACTATAACTCTGTATTAACCATCATATATAGCA
TATATGTGTATATGTATGTGTGTGTGTGTATATGTGTATATAAATATATGTGTGTGTATATACACACATGTACACACCCTACAACCCAGTGATTTCAAAA
AATTAAACATTTGTTTAGCTCATGAATCTGTGGGTTGGGTGAACATTTCTATTGGTCTTGGCTGGGCTCACCTGTACCCAGTCAGCTGCAGGGTCTAGCT
CTTCTTATCTTGGCTGGGATCTCACACATGTCTAGGATCAGCTGCTTTACTAGTCTAGGATTGTCTTGGCTGAGACAGGTGGACTACTCAGTTCTCCTCC
ACTGCCTTATCCTTCAGCTGGCCAGCCCAGAAATGTTGCCATGTTTACAGCATAAGAGCAAGCAAGAAAGAATAATATGCAACCACTTTTCCAAGCCTAA
GGTGAAAGGGCGGGCAGAACCTGTGGTGTTAGGAGGCAACTCATACCAGCCCATGGGTCTACCGTTTAATTTTCAGAAATTTGGCAAGCTGATTGTTAAC
ACAGCTGTTGTTTAATTTATGTACTTGTAATTAAATAATTTACATTAAAACAAAGATAATAGGTACTCAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00030130

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.