Detailed information on ENST00000577967

lncRNA-RNA interactions

Number of interactions: 81

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding ENST00000577967 569 250 UTR3 Trans
ENST00000380641 centlein, centrosomal protein protein coding ENST00000577967 656 307 UTR3 Trans
ENST00000382142 myotubularin related protein 12 protein coding ENST00000577967 589 293 UTR3 Trans
ENST00000389534 zinc finger protein 841 protein coding ENST00000577967 565 273 UTR3 Trans
ENST00000426391 zinc finger protein 841 protein coding ENST00000577967 565 273 UTR3 Trans
ENST00000448214 antisense antisense ENST00000577967 606 286 noncoding Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay ENST00000577967 591 296 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000577967 642 281 noncoding Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000577967 629 281 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000577967 633 287 UTR3 Trans
ENST00000594295 zinc finger protein 841 protein coding ENST00000577967 565 273 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000577967 610 306 UTR3 Trans
ENST00000620788 pleckstrin homology-like domain, family B, member 1 retained intron ENST00000577967 605 287 noncoding Trans
TCONS_00001594 lincRNA novel protein coding ENST00000577967 613 291 UTR5 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000577967 631 308 UTR5 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000577967 602 283 UTR3 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000577967 631 308 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000577967 602 283 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding ENST00000577967 569 250 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000577967 612 287 UTR3 Trans
TCONS_00010077 Ras association (RalGDS/AF-6) domain family member 5 novel protein coding ENST00000577967 566 288 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000577967 633 288 UTR3 Trans
TCONS_00030165 antisense novel protein coding ENST00000577967 606 286 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000577967 633 287 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000577967 609 300 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000577967 610 307 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000577967 610 307 UTR3 Trans
TCONS_00075844 forkhead box N3 novel protein coding ENST00000577967 510 306 UTR3 Trans
TCONS_00075845 forkhead box N3 novel protein coding ENST00000577967 510 306 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding ENST00000577967 614 286 UTR3 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding ENST00000577967 624 304 UTR3 Trans
TCONS_00090941 nucleoporin 93kDa novel protein coding ENST00000577967 624 304 UTR5 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000577967 620 303 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000577967 620 303 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000577967 620 303 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000577967 620 303 UTR3 Trans
TCONS_00101146 myosin phosphatase Rho interacting protein novel protein coding ENST00000577967 525 295 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000577967 605 274 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000577967 605 274 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000577967 605 274 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000577967 605 274 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000577967 605 274 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000577967 605 274 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000577967 605 274 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000577967 552 259 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000577967 631 259 UTR5 Trans
TCONS_00135644 zinc finger protein 841 novel protein coding ENST00000577967 565 273 UTR3 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding ENST00000577967 657 286 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000577967 657 286 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000577967 624 308 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000577967 624 308 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000577967 624 308 UTR3 Trans
TCONS_00148484 EGF containing fibulin-like extracellular matrix protein 1 novel protein coding ENST00000577967 606 306 UTR3 Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000577967 543 308 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000577967 543 308 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000577967 617 294 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000577967 614 313 UTR3 Trans
TCONS_00157701 VAMP (vesicle-associated membrane protein)-associated protein B and C novel protein coding ENST00000577967 596 308 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000577967 631 286 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000577967 608 289 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000577967 605 277 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000577967 605 277 UTR5 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000577967 669 304 UTR3 Trans
TCONS_00210637 polymerase (DNA directed), eta novel protein coding ENST00000577967 548 273 UTR3 Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000577967 621 286 UTR3 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding ENST00000577967 674 308 UTR3 Trans
TCONS_00230811 kielin/chordin-like protein novel protein coding ENST00000577967 635 304 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000577967 604 306 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000577967 681 287 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000577967 602 286 UTR5 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000577967 518 233 UTR3 Trans
TCONS_00243475 osteoclast stimulating factor 1 novel protein coding ENST00000577967 643 310 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000577967 685 304 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000577967 685 304 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000577967 643 310 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000577967 693 280 UTR5 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000577967 603 312 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000577967 603 312 UTR3 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding ENST00000577967 551 292 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000577967 640 306 UTR5 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding ENST00000577967 623 280 UTR3 Trans

Sequence

>TCONS_00253055 (5798 nt)
CATATCACTGCACTCCAGCCTGGGCCACAGAGCGAGACCCTATCAAAAGAAAAAAATAGTGTTAATACATGATTACATGATTAGAGAAACTAAAAGCCAA
ATGGGAGATAATGCTACTTGCTATTTTTGAAGCATCTCCCAGTGTATCTGGTTTTTAGTATTTTCAGGCATGCATATCTTTTTTTCAAAGCTTAAAAAAT
TAAAATCAAACTCTGCTTTCTTCCTAAGCTTGGAAATTACTCATGTATTAATGAGTAGTTCTTGGCACCAGCAGCGTTTCTTAAACTGAAAAGACTGGTC
AGACATAGTTGACCTTTGCTACTGAATAATGCCTACCATTGCATTTATTATCAGTTATCATATTTGTTGATTTACCTCCAGTGTAGTTTGGTTTACCTCC
AGTGTACAGAATACAATCTCAGTTTAATTTGCACCAGTAAGGTGCAACCTATCCTGAAACAGAAAGCTATGGGAACAAAACCCTTTGAGAAGATGGAAAA
TAAAGGAAAGAAACTGCTCCAGGGATGTATTAGAGCTTTCTTTGAGTCCTCAGTGAAAGCTTAAACACTTTATGTCCAAACATTTTCTTTTTAGTGTATT
CCCATTTATAGACACTGTAGTTAATGAACTTGCATATTCTTAACTTTTGTTTATAGGAACAAGGAAAAGTTTTGATCACTTGATATCAGACACAAAGGCT
CCTAAAAGGCAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAGGAGAGTAGCAGAAACTGATTATGAAATGGGTGAGAAACAAAGTATTGATC
TAGATCATTGAAAATAAGGTGGGAGAGTACATGAAAGTCATGTTTATTTTCCAGCCATTTCTTAGAATCTTTAGAGTGAAATATAGAAACGTTTGCCATT
TCTCAAAAGATAAACTCTACCATTCAAGACAGTTATCTTGAAGCTTGTGTAAAAATTAATCATATATATTATATACAGCATTGTAAATAGGTAGCCAAAA
CTTTTGTGTAGGCGAATAGTAATTCTCTATGATGTTTATGTTAGTATTTTAAGTATCTACTAAAGAAAGCTGTTGAATTTTAGAAGTAACATTGAAATAG
TTAGGTGAAGTGATTATCCAGGTGTTTGATCACGTTAATTCCCTATCTTGCTGCAGAAACTCAGAGGATTTCCTCATCACAACAGCACCCACATTTACGT
AAAGTTTCAGTGTCTGAATCAAATGTTCTCTTGGATGAAGAAGTACTTACTGATCCGAAGATCCAGGCGCTGCTTCTTACTGTTCTAGTAAGGATTTCCC
CTTTTTGAGTCCCCCACCCTCAAATTTTTATTCCAGTCTACTTTTAGGAGGCCCTTAAATATTAAAAACATGAATAGGATACAGTCTTCTACTTCTCACC
CAAACAGATAACAATTCAGCCACAAAGTAAAAATGTTGTGTGTTTACTTTTTTGCATCTTGGCAGGCTACACTGGTAAAATATACCACAGATGAGTTTGA
TCAACGAATTCTTTATGAATACTTAGCAGAGGCCAGTGTTGTGTTTCCCAAAGTCTTTCCTGTTGTGTAAGTATCTCCTTTTGATTTTAATTCACCTTCG
TGCCTGTCTTTAAGTTAAATGCTTACCCAGTAATGTGCACTGGTTGCAAAGAGGGCAAAATGAGATATTGTGATAGTGATTTTAGCTTTGAGACAGTAGG
TTTAATGAGGGTTAAGATTAGTTTTGACCTACTAGATCTATTAGAAAGTTTATAAGGAAAGACTTTTAAAAAATCTGGTTGATTTATTTAAGTGGTTTAT
TTTGATGATCATTGCTCATTTTCCTCACTTAGAAGCAAACTATTAGACTGCTATATCTAAATCAGCATATCTGTTTTGGTTTACTTTTTAGTAGAGCTTT
TGTATTTATCCACAGCTGAGTGAAAACAAAATTGACCTTCTGTTTAGGAGGTGAATTGTTTACTCTCTCTTAAGGACTAAAAAATATTAACCTCAAAGTG
TTCAAATTTAAATAGTTCAAATAAATTCTTTTCCTGATCTAGGCCTTCTATATCATGTCATTATTTTCTTTTTTTAATCTCATGTTAGAATTTTAGAGAG
TTAGAACTCAGTTATTTTTATTAATGGAGTGTAGCCGGGTTAGAAATAATTTTTTTCCTAAGTTTCAGTTGGATCATGTATTTCACTCCCTCTAAACTAT
TTTGCTTTCCCTATTTGATCTGACTCAGCATTTTAAAAGCACTGATTAACATTAAATTTAATTTTTTTCTTTTTGTTTTGCACAGATCCTAAATTTAGTT
TTAACTTCCTAAGCGCATGTCAGTATACAACAGATGGAAATAGTACTAAAACATGCTAAGTAGCAGACAGAGCCAACCTTGTCTTAAGCAAACATTTACC
GTATATGGTTACACATGGTTATATGACACTACCAGTTGTTTGTTTTCACAATTTCTTCCCTGGTGACTAAAAACAAAAGACAAACAAAAACAGACACACA
CACATGTTCATTGTAGAAAATTTGGAAAATGAAGAAATGCCCCAGAAAGTAAAAAGCACTCATCTCCCTTTAATTTTGGCACATTATTCTGGGGAATGTA
TATTATGTTTTCCACTACATATTTTCATTTAATTTTCCTCTAAAATGTTCCTCTGTTGACTTTTTTTTTCTTTTAGGCATAATTTGTTGGACTCTAAGAT
CAACACCCTGTTATCATTGTGCCAAGATCCAAATTTGTTAAATCCAATCCATGGAATTGTGCAGAGTGTGGTGTACCATGAAGAATCCCCACCACAATAC
CAAACATCTTACCTGCAAAGTAAATAAATGTATCTGGAGAAGGATGGTTGATGAACTTGCTAACATGCGCGCTGTTGTAGAATGCACTGACTACAGAATT
CTTTATAAGGGATAGACTTGTTCATACTTTTATTTCCATATTCCATTTTTTTACTCTCTCAACTGTATGTCCAATGTAACTGGTTGACAACTTTTTATGC
TGAGTATATTTTAAGTAGGTTTTAGTTGCTTTGACACTCATTCTAAAAACATGTTTTCAACATGTACATAGGGTTTATATATCATCAGCTATATGACTTA
TTTAATTTCTGTTACAATTAAAAGATACCTTGCTTGTTATAAGAGTAAAATTTGATTTGTTGCAGGTTTTGGTTTTAATGGCTTGTGGCGGTTTGCAGGA
CCGTTTTCAAAGGTAAGAAAATATATTTTTCTCTAACTTTTGGCAAAATGAAGGTTTCTGTTCAAATTAGTATGCCTGCTTTAAGAACACACAATGTGCT
GAAAACCAGAAAAATAATTCACAATAAACACATATGTTACTTTTATAAAAAGTTTCTCATCACAAGGTTTTTTTCCAGGAGGCAGCATGGTGTTGGGGTG
TGTGTATTCACTTTTACAAACAAAGTCAACTTATGATCAATTTTTCAGAAGAGTATGATAAACCTCTGTGATACTTTTCTGCCACAGTCCCTTGTGTATT
TGATAATCTTAATGCACACAGTTAGATATCTTATGACTAGCAAGGAGCATTACCATGGTTAAAATCTATTTCATGAAAACATTTTTATTTCCAGCCTATT
AGATTAGATTAATTTCTCTCTGGATTTGTCCTCATTTGCTCTTATTCAGTTTTTTTGTTTGTTTGTTTGTTTTGTGAGACGGAGTCTCACTCTGTCTCCA
GGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGTCTCCCGAGTAGCTGAGACTACAGG
CATGCAGCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAAACAGGGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCTTGACCTCGTGATCTGCC
CACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCCTCAGTTTGTTTTTTGATTGGCATTAGTTTATGTAGTGCTACATAAG
ATGTATATGATCATTTTCTCTGTATGTGGGCTCTCTCCAAATTGATCAAAGTTCCTTGAAGACAGGGTTTCTGTTTCTTCCTTAAACAGTTCCTGGTGCA
GTGTTTTAGATACAGGGGGTGCTAAATCAATATGAATTGTATAAACCTTGTTCCAGTTTTTAAGAATTGGGTATTTTATTTATTTCCTTTCACTATTACT
TGAATATCTGTCAACATGCAAAGGTTGTCACTTAAAAAATGGGCCTGAAGTTACAGAAATAAGTATATCATACAGAAGTTTTTGCATTTGGATTGCCAGT
AACCCTCTGAGCCCTTTACAGTGTCTAGTGAGTGGAATCTAAATGGCAGCTGGAATGATGATGCTCTGCTCATTTTCTCTGTTTTGGAAAATTGGCTAGA
CATCATTCCTGGTGATTGTATTGTCTCAGTATTACATTCAGTCTGTCTTGTGCATGGCTTTCAGAAAATGCAGGTTCATCTGGAAGCTTTAAGCTGAATA
GAACTCCCTGTTGTAAGTCCTATGGTAGTCTATAAATATTACTCCACTCCCCTTTTTTAATGATAAGTAATACAAAGGAAGAAAAATAGTAAATTAAGTC
CAAACAAAATTAATATTTTTGGCTTCAGATGGGGATTTACTTAAAAAAAAGGAACTAAAATAATTTCCTATTTTCCATTACAGCAAACACAAATTCCAGA
CTATGCTGAGCTTATTGTTAAGTTTCTTGATGCCTTGATTGACACGTACCTGCCTGGAATTGATGAAGAAACCAGTGAAGAATCCCTCCTGACTCCCACA
TCTCCTTACCCTCCTGCACTGCAGAGCCAGCTTAGTATCACTGCCAACCTTAACCTTTCTAATTCCATGACCTCACTTGCAACTTCCCAGCATTCCCCAG
GTCAGTAAATGTGATCTTTATATGACTTTGAGCAACAATATAAGACACCAACATTAGGAATTCCCTTGTGATCAGTTTATAGCAAATTTTGCTCCTTTTT
CTTATGAGATTCACCTTACATTTCTTCTTTACCTTGTAACTGACTTGACTTTTGTTATTCTATGAAGCTTTCTACTTTCAAACAAGTTGTACATAAGACA
GTAAAATGTTAAAATGTCCACATGATATTCCAAGGTTGACAAGTTTGTAGAGTTTGGGCAGGAAGAGGAACTTAAAACACATTATTCTGTAAGTGAACAG
AACTATAATTTATTTACTAGATATACTAACATTGCCCTAAGGGCCTCTTTCTCTGTCTCTGATACAGCATACTATATCAAAAAAAAAAAAAAAAAAAAAA
AAAAAGAAGAAGAAGAAGAAACACAAAATCTATTAGGTACCTCACTTTCCTGCTGCCAGCAATAACTCAACCATCCATAGACCATCCTGAAAATCTGGAA
GTAAATAAATAATCAAACAAAAAATTCATCTCAAGAAAATAACATCTTAAAGCCCATAAGCATATATATACCAATTCGTAATGCAACTTAGATTTGAATA
CACTGAGAAATACTAATAGCTAATAGCTCCAGTGGGACTGAGATAAACAAGGTGGGAGAAATGGCAAACCTACAGAACTCTGGACTTATTCAGTGTCATA
GTGAATGGTTTCATACAACTCTGGTTGACCCTGGAGGTGCTATTCATTATAGAACTTAAACTATTGTGTGTGTTATTATGACAGTGAGTAATGAAGGAAA
GCTTTTGTTATGGTTGTGTTTTCTATTTAGAAAGATATTCTTCTAAAATGGTTAAAAATAAAAGAAACTTTAGTTGTTTAACGTTCCATTATCTGAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.